R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
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Results 1 - 10 of 23 found.
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coloc.test.summary (Package: coloc) : Colocalisation testing using regression coefficients

Colocalisation testing supplying only regression coefficients and their variance-covariants matrices

● Data Source: CranContrib
● Keywords:
● Alias: coloc.test.summary
● 0 images

coloc.abf.snpStats (Package: coloc) : Bayesian colocalisation analysis using snpStats objects

Bayesian colocalisation analysis using snpStats objects

● Data Source: CranContrib
● Keywords:
● Alias: coloc.abf.snpStats
● 0 images

logdiff (Package: coloc) : logdiff

Internal function, logdiff

● Data Source: CranContrib
● Keywords:
● Alias: logdiff
● 0 images

coloc.abf (Package: coloc) : Fully Bayesian colocalisation analysis using Bayes Factors

Bayesian colocalisation analysis

● Data Source: CranContrib
● Keywords:
● Alias: coloc.abf
● 0 images

approx.bf.p (Package: coloc) : Internal function, approx.bf.p

Internal function, approx.bf.p

● Data Source: CranContrib
● Keywords:
● Alias: approx.bf.p
● 0 images

coloc-package (Package: coloc) : Colocalisation tests of two genetic traits

Performs the colocalisation tests described in Plagnol et al (2009) and Wallace et al (in preparation) and draws some plots.

● Data Source: CranContrib
● Keywords: package
● Alias: coloc-package
● 0 images

coloc-class (Package: coloc) : Classes code{"coloc"

Classes designed to hold objects returned by function coloc.test which performs a test of the null hypothesis that two genetic traits colocalise - that they share a common causal variant.

● Data Source: CranContrib
● Keywords: classes
● Alias: coloc-class, colocBMA, colocBayes-class, colocBayesBMA
● 0 images

sdY.est (Package: coloc) : Estimate trait variance, internal function

Estimate trait standard deviation given vectors of variance of coefficients, MAF and sample size

● Data Source: CranContrib
● Keywords:
● Alias: sdY.est
● 0 images

Var.data.cc (Package: coloc) : Var.data

variance of MLE of beta for case-control

● Data Source: CranContrib
● Keywords:
● Alias: Var.data.cc
● 0 images

Var.data (Package: coloc) : Var.data

variance of MLE of beta for quantitative trait, assuming var(y)=0

● Data Source: CranContrib
● Keywords:
● Alias: Var.data
● 0 images