coloc

Package: coloc
Type: Package
Depends: methods, colorspace, MASS, BMA
Suggests: ggplot2, snpStats
Title: Colocalisation tests of two genetic traits
Version: 2.3-1
Date: 2013-09-26
Authors@R: c(person("Chris", "Wallace", role=c("aut","cre"),
email = "chris.wallace@cimr.cam.ac.uk"),
person("Claudia","Giambartolomei", role="aut",
email="claudia.giambartolomei.10@ucl.ac.uk"),
person("Vincent","Plagnol", role="ctb",
email="v.plagnol@ucl.ac.uk"))
Maintainer: Chris Wallace <chris.wallace@cimr.cam.ac.uk>
Description: Performs the colocalisation tests described in Plagnol et al
(2009), Wallace et al (2013) and Giambartolomei et al (2013).
URL: https://github.com/chr1swallace/coloc
BugReports: https://github.com/chr1swallace/coloc/issues
License: GPL
LazyLoad: yes
Collate: 'AllClasses.R' 'bma.R' 'coloc-package.R' 'coloc.combine.R'
'coloc.test.R' 'pcs.R' 'private.R' 'claudia.R'
Packaged: 2013-09-27 09:09:10 UTC; chrisw
Author: Chris Wallace [aut, cre],
Claudia Giambartolomei [aut],
Vincent Plagnol [ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-09-29 17:23:08

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'coloc' ...
** package 'coloc' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'df' in package 'coloc'
** help
*** installing help indices
  converting help for package 'coloc'
    finding HTML links ... done
    Var.data                                html  
    Var.data.cc                             html  
    approx.bf.estimates                     html  
    approx.bf.p                             html  
    bf                                      html  
    coloc-class                             html  
    coloc-package                           html  
    coloc.abf                               html  
    coloc.abf.datasets                      html  
    coloc.abf.snpStats                      html  
    coloc.bma                               html  
    coloc.test                              html  
    coloc.test.summary                      html  
    colocPCs-class                          html  
    combine.abf                             html  
    eta                                     html  
    fillin                                  html  
    logdiff                                 html  
    logsum                                  html  
    pcs.model                               html  
    pcs.prepare                             html  
    process.dataset                         html  
    sdY.est                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (coloc)
Making 'packages.html' ... done