R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 21 found.
[1] < 1 2 3 > [3] Sort:

CNV.detailplot (Package: conumee) : CNV.detailplot

Create CNV plot for detail region.

● Data Source: BioConductor
● Keywords:
● Alias: CNV.detailplot, CNV.detailplot,CNV.analysis-method
● 4 images

CNV.detailplot_wrap (Package: conumee) : CNV.detailplot_wrap

Create CNV plot for all detail regions.

● Data Source: BioConductor
● Keywords:
● Alias: CNV.detailplot_wrap, CNV.detailplot_wrap,CNV.analysis-method
● 4 images

CNV.fit (Package: conumee) : CNV.fit

Normalize query sample intensities by fitting intensities to reference set using a linear regression model.

● Data Source: BioConductor
● Keywords:
● Alias: CNV.fit, CNV.fit,CNV.data,CNV.data,CNV.anno-method
● 0 images

CNV.genomeplot (Package: conumee) : CNV.genomeplot

Create CNV plot for the whole genome or chromosomes.

● Data Source: BioConductor
● Keywords:
● Alias: CNV.genomeplot, CNV.genomeplot,CNV.analysis-method, plot,CNV.analysis,ANY-method
● 4 images

CNV.load (Package: conumee) : CNV.load

Prepare combined intensities from various input objects.

● Data Source: BioConductor
● Keywords:
● Alias: CNV.load, CNV.load,MethylSet-method, CNV.load,data.frame-method, CNV.load,matrix-method, CNV.load,numeric-method
● 0 images

CNV.merge_bins (Package: conumee) : CNV.merge_bins

Merge bins containing less than the defined number probes with neighboring bin containing fewer probes.

● Data Source: BioConductor
● Keywords:
● Alias: CNV.merge_bins
● 0 images

CNV.segment (Package: conumee) : CNV.segment

Segment bin values (wrapper of DNAcopy package).

● Data Source: BioConductor
● Keywords:
● Alias: CNV.segment, CNV.segment,CNV.analysis-method
● 0 images

CNV.write (Package: conumee) : CNV.write

Output CNV analysis results as table.

● Data Source: BioConductor
● Keywords:
● Alias: CNV.write, CNV.write,CNV.analysis-method
● 4 images

detail_regions (Package: conumee) : detail_regions

Example of genomic regions to be analyzed in detail (e.g. candidate oncogenes/TSGs).

● Data Source: BioConductor
● Keywords:
● Alias: detail_regions
● 0 images

exclude_regions (Package: conumee) : exclude_regions

Example of genomic regions to exclude (e.g. known polymorphic regions).

● Data Source: BioConductor
● Keywords:
● Alias: exclude_regions
● 0 images