R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 6 of 6 found.
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dataSource (Package: domainsignatures) : Contructor for annotation object

This function creates the necessary annotation object of class ipDataSource containing the pathway and InterPro ID mappings.

● Data Source: BioConductor
● Keywords: IO
● Alias: dataSource
● 0 images

domainsignatures-package (Package: domainsignatures) :

Compute similarities to pathways for a set of entrezgene identifiers based on the InterPro domain signature

● Data Source: BioConductor
● Keywords: package
● Alias: domainsignatures, domainsignatures-package
● 0 images

getKEGGdata (Package: domainsignatures) : Fetch KEGG annotations and InterPro domains

Get all available KEGG annotations and InterPro domains for a set of entrezgene identifiers from the KEGG annotation package and from the ensembl biomaRt.

● Data Source: BioConductor
● Keywords: IO
● Alias: getKEGGdata
● 0 images

getKEGGdescription (Package: domainsignatures) : KEGG description from ID

Get description of KEGG pathways from a list of KEGG identifiers.

● Data Source: BioConductor
● Keywords: IO
● Alias: getKEGGdescription
● 0 images

gseDomain (Package: domainsignatures) : Geneset enrichment based on InterPro domain signatures

Compute the similarity to pathways specified trough dataSource for a set of entrezgene identifiers.

● Data Source: BioConductor
● Keywords: manip
● Alias: gseDomain
● 0 images

ipDataSource-class (Package: domainsignatures) : A class to store mapping information between genes, pathways and

This class represents the data necessary to run gseDomain

● Data Source: BioConductor
● Keywords: classes
● Alias: ipDataSource, ipDataSource-class, show,ipDataSource-method
● 0 images