R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Classification

Results 1 - 7 of 7 found.
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GO2list (Package: geecc) :

Filter GO and KEGG database and transform database to list

● Data Source: BioConductor
● Keywords:
● Alias: GO2level, GO2list, GO2offspring, KEGG2list
● 0 images

concub-class (Package: geecc) : Class code{"concub"

An object of type concub

● Data Source: BioConductor
● Keywords: classes
● Alias: concub-class, getTable, getTable,concub-method, initialize,concub-method, show,concub-method
● 0 images

concubfilter-class (Package: geecc) : Class code{"concubfilter"

An object of type concubfilter

● Data Source: BioConductor
● Keywords: classes
● Alias: concubfilter-class, initialize,concubfilter-method, p.value, p.value,concubfilter-method, p.value<-, p.value<-,concubfilter-method, show,concubfilter-method
● 0 images

filterConCub (Package: geecc) :

Performs filtering on results from two- or three-way tests

● Data Source: BioConductor
● Keywords:
● Alias: filterConCub
● 0 images

geecc-package (Package: geecc) :

This package performs gene set enrichment analyses considering two or three categories. Categories might be regulated genes, sequence length, GC content, GO terms, KEGG pathways and so on.

● Data Source: BioConductor
● Keywords: package
● Alias: geecc, geecc-package
● 2 images

plotConCub (Package: geecc) :

The function generates a heatmap by calling the heatmap.2-function from the gplots-package. Each cell shows the log2 odds ratio of the test for the corresponding variables. In addition, stars indicate the P-value for this test.

● Data Source: BioConductor
● Keywords:
● Alias: plotConCub
● 2 images

runConCub (Package: geecc) :

Perform the enrichment analysis on two- or three-way contingency tables.

● Data Source: BioConductor
● Keywords:
● Alias: runConCub
● 0 images