Last data update: 2014.03.03

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CranContrib
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Results 1 - 10 of 11 found.
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anolis.ssd (Package: ouch) : Greater Antillean anolis lizard sexual size dimorphism data.

The dataset consists of sexual size-dimorphism data for 38 species of anoles from Cuba, Hispaniola, Jamaica, and Puerto Rico (Butler, Schoener, and Losos 2000). Each of these species belongs to one of six microhabitat types, or “ecomorphs” (sensu Williams, 1972): trunk-ground, grass-bush, trunk, trunk-crown, twig, and crown-giant. The data were used to demonstrate an evolutionary association between habitat type and degree of sexual size dimorphism.
● Data Source: CranContrib
● Keywords: models
● Alias: anolis.ssd
● 0 images

browntree (Package: ouch) : Fitted phylogenetic Brownian motion model

A fitted phylogenetic Brownian-motion model object.
● Data Source: CranContrib
● Keywords: models
● Alias: bootstrap,browntree-method, bootstrap-browntree, browntree, browntree-class, coef,browntree-method, coef-browntree, coerce,browntree,data.frame-method, logLik,browntree-method, logLik-browntree, plot,browntree-method, plot-browntree, print,browntree-method, print-browntree, show,browntree-method, show-browntree, simulate,browntree-method, simulate-browntree, summary,browntree-method, summary-browntree, update,browntree-method, update-browntree
● 0 images

ape2ouch (Package: ouch) : Convert an "ape" tree to an "ouch" tree.

ape2ouch translates ape's phylo representation of a phylogenetic tree into ouch's ouchtree representation. The user can change the branch lengths while preserving the topology.
● Data Source: CranContrib
● Keywords: models
● Alias: ape2ouch
● 0 images

brown (Package: ouch) : Fit a Brownian-motion model of evolution along a phylogenetic tree

brown fits a Brownian motion model to the given data.
● Data Source: CranContrib
● Keywords: models
● Alias: brown
● 0 images

hansentree (Package: ouch) : hansen tree object

A fitted phylogenetic Hansen-model object.
● Data Source: CranContrib
● Keywords: models
● Alias: hansentree, hansentree-class
● 0 images

hansen (Package: ouch) : Hansen model of evolution along a phylogenetic tree

Fits the Ornstein-Uhlenbeck-based Hansen model to data. The fitting is done using optim or subplex.
● Data Source: CranContrib
● Keywords: models
● Alias: hansen
● 0 images

paint (Package: ouch) : Painting selective regimes on a phylogenetic tree.

Function to paint selective regimes on a phylogenetic tree.
● Data Source: CranContrib
● Keywords: models
● Alias: paint
● 0 images

bimac (Package: ouch) : Anolis bimaculatus lizard size data.

This is the Anolis bimaculatus dataset used in Butler & King (2004). It is used to test a hypothesis of character displacement using an interspecific dataset of body sizes and current data on sympatry/allopatry. The data frame consists of the following columns: species which are species names, size which is the phenotypic data, and the variables ancestor and time which specify the topology of the phylogeny and the location of the nodes in time, respectively. The columns OU.1, OU.3, OU.4, and OU.LP specify four hypothetical arrangements of selective regimes. Explanations of the data are given below.
● Data Source: CranContrib
● Keywords: models
● Alias: bimac
● 0 images

hansentree-methods (Package: ouch) : Methods of the "hansentree" class

Methods of the "hansentree" class.
● Data Source: CranContrib
● Keywords: models
● Alias: as,hansentree-method, bootstrap, bootstrap,hansentree-method, bootstrap-hansentree, coef,hansentree-method, coef-hansentree, coerce,hansentree,data.frame-method, hansentree-methods, logLik,hansentree-method, logLik-hansentree, plot,hansentree-method, plot-hansentree, print,hansentree-method, print-hansentree, show,hansentree-method, show-hansentree, simulate,hansentree-method, simulate-hansentree, summary,hansentree-method, summary-hansentree, update,hansentree-method, update-hansentree
● 0 images

ouch-package (Package: ouch) : Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses

The ouch package provides facilities for Ornstein-Uhlenbeck based methods of phylogenetic comparative analysis.
● Data Source: CranContrib
● Keywords: models
● Alias: ouch-package
● 0 images