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Last data update: 2014.03.03

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Results 1 - 10 of 21 found.
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Gene set tests statistics (Package: topGO) : Gene set tests statistics

Methods which implement and run a group test statistic for a class inheriting from groupStats class. See Details section for a description of each method.

● Data Source: BioConductor
● Keywords: misc
● Alias: GOFisherTest, GOKSTest, GOKSTiesTest, GOSumTest, GOglobalTest, GOtTest, permSumStats, permSumStats.all
● 0 images

annFUN (Package: topGO) : Functions which map gene identifiers to GO terms

These functions are used to compile a list of GO terms such that each element in the list is a character vector containing all the gene identifiers that are mapped to the respective GO term.

● Data Source: BioConductor
● Keywords: misc
● Alias: annFUN, annFUN.GO2genes, annFUN.db, annFUN.file, annFUN.gene2GO, annFUN.org
● 0 images

classicCount-class (Package: topGO) : Class "classicCount"

This class that extends the virtual class "groupStats" by adding a slot representing the significant members.

● Data Source: BioConductor
● Keywords: classes
● Alias: classicCount-class
● 0 images

classicExpr-class (Package: topGO) : Class "classicExpr"

This class that extends the virtual class "groupStats" by adding two slots for accomodating gene expression data.

● Data Source: BioConductor
● Keywords: classes
● Alias: classicExpr-class
● 0 images

classicScore-class (Package: topGO) : Class "classicScore"

A class that extends the virtual class "groupStats" by adding a slot representing the score of each gene. It is used for tests like Kolmogorov-Smirnov test.

● Data Source: BioConductor
● Keywords: classes
● Alias: classicScore-class
● 0 images

Determines the levels of a Directed Acyclic Graph (DAG) (Package: topGO) : Utility functions to work with Directed Acyclic Graphs (DAG)

Basic functions to work witg DAGs

● Data Source: BioConductor
● Keywords: graphs
● Alias: buildLevels, getGraphRoot, getNoOfLevels, reverseArch
● 0 images

dignostic-methods (Package: topGO) : Diagnostic functions for topGOdata and topGOresult objects.

The GenTable function generates a summary of the results of the enrichment analysis.

● Data Source: BioConductor
● Keywords: methods
● Alias: printGenes, printGenes,topGOdata,character,character-method, printGenes,topGOdata,character,missing-method, printGenes-methods
● 2 images

elimCount-class (Package: topGO) : Classes "elimCount" and "weight01Count"

Classes that extend the "classicCount" class by adding a slot representing the members that need to be removed.

● Data Source: BioConductor
● Keywords: classes
● Alias: elimCount-class, leaCount-class, weight01Count-class
● 0 images

elimExpr-class (Package: topGO) : Class "elimExpr"

Classes that extend the "classicExpr" class by adding a slot representing the members that need to be removed.

● Data Source: BioConductor
● Keywords: classes
● Alias: elimExpr-class, leaExpr-class, weight01Expr-class
● 0 images

elimScore-class (Package: topGO) : Classes "elimScore" and "weight01Score"

Classes that extend the "classicScore" class by adding a slot representing the members that need to be removed.

● Data Source: BioConductor
● Keywords: classes
● Alias: elimScore-class, leaScore-class, weight01Score-class
● 0 images