R Graphical Manual

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Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 301 - 310 of 182600 found.
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DODSGrab (Package: rNOMADS) :

This function interfaces with the NOMADS server to download weather, ocean, and sea ice data. The available models can be viewed by calling NOMADSRealTimeList and NOMADSArchiveList. The data arrives in ascii format, so this function can be used to retrieve data on any operating system.

● Data Source: CranContrib
● Keywords: connection
● Alias: DODSGrab
● 0 images

GetDODSModelRunInfo (Package: rNOMADS) :

Given a URL from GetDODSDates and a model run from GetDODSModelRuns, get information on the model domain, levels, and variables.

● Data Source: CranContrib
● Keywords: utilities
● Alias: GetDODSModelRunInfo
● 0 images

BuildProfile (Package: rNOMADS) :

Takes the output of ReadGrib or DODSGrab and extracts data at a specific point, performing interpolation if required.

● Data Source: CranContrib
● Keywords: manip
● Alias: BuildProfile
● 0 images

UploadFile (Package: rPlant) : File management

Functions for uploading and manipulating files in the iPlant infrastructure

● Data Source: CranContrib
● Keywords:
● Alias: CopyFile, DeleteFile, MoveFile, PermissionsFile, RenameFile, ShareFile, SupportFile, UploadFile
● 0 images

TNRS (Package: rPlant) : Resolving Names via TNRS

The function ResolveNames interacts with the TNRS server at iPlant that uses fuzzy name matching to find standardized taxonomic plant names. GetPhylotasticToken is similar, but can be used for animal taxa as well, since it also utilizes the NCBI and ITIS databases. GetPhylotasticToken returns a unique token that can be checked online or using the RetrieveTNRSNames function. CompareTNRS will compare the original list of names to the returned TNRS names to see which names changed.

● Data Source: CranContrib
● Keywords:
● Alias: CompareNames, GetPhylotasticToken, ResolveNames, RetrieveTNRSNames, TNRS
● 0 images

ListDir (Package: rPlant) : Directory management

Functions for listing the contents of a directory, making new directories, or deleting entire directories in the iPlant infrastructure

● Data Source: CranContrib
● Keywords:
● Alias: CopyDir, DeleteDir, ListDir, MakeDir, MoveDir, PermissionsDir, RenameDir, ShareDir
● 0 images

Fasttree (Package: rPlant) : FastTree Dispatcher

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. See http://meta.microbesonline.org/fasttree/

● Data Source: CranContrib
● Keywords:
● Alias: Fasttree
● 0 images

Internal functions (Package: rPlant) : Internal Functions

All internal functions.

● Data Source: CranContrib
● Keywords: internal
● Alias: Check, Error, Renew, RenewToken, TestApp, Time, appINFO, find.input, rplant.env
● 0 images

Validate (Package: rPlant) : Authentication functions

This basic function authenticates users.

● Data Source: CranContrib
● Keywords:
● Alias: Validate
● 0 images

Muscle (Package: rPlant) : MUSCLE alignment

MUSCLE is a program for creating multiple alignments of amino acid or nucleotide sequences. A range of options is provided that give you the choice of optimizing accuracy, speed, or some compromise between the two. The manual is also available here: http://www.drive5.com/muscle/manual/

● Data Source: CranContrib
● Keywords:
● Alias: Muscle
● 0 images