DEGreport

Package: DEGreport
Version: 1.8.2
Date: 2015-07-02
Type: Package
Title: Report of DEG analysis
Description: Creation of a HTML report of differential expression
analyses of count data. It integrates some of the code
mentioned in DESeq2 and edgeR vignettes, and report a ranked
list of genes according to the fold changes mean and
variability for each selected gene.
biocViews: DifferentialExpression, Visualization, RNASeq,
ReportWriting, GeneExpression
Suggests: knitr, biomaRt, RUnit, BiocStyle, BiocParallel, coda,
Nozzle.R1
Depends: R (>= 3.2.0)
Imports: plyr, utils, ggplot2, edgeR, BiocGenerics
Author: Lorena Pantano
Maintainer: Lorena Pantano <lorena.pantano@gmail.com>
License: GPL (>=2)
VignetteBuilder: knitr
Roxygen: list(wrap = TRUE)
NeedsCompilation: no
Packaged: 2016-05-16 04:35:42 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DEGreport' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DEGreport'
    finding HTML links ... done
    DEGreportSet                            html  
    createReport                            html  
    degBI                                   html  
    degBIcmd                                html  
    degComb                                 html  
    degFC                                   html  
    degMB                                   html  
    degMV                                   html  
    degMean                                 html  
    degNcomb                                html  
    degObj                                  html  
    degPR                                   html  
    degRank                                 html  
    degVB                                   html  
    degVar                                  html  
    figurebyexp                             html  
    figurebyvar                             html  
    figurepvaluebyexp                       html  
    figurepvaluebyvar                       html  
    figurepvaluebyvarexp                    html  
    figurerank                              html  
    geneInfo                                html  
    humanSexDEedgeR                         html  
    tablerank                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DEGreport)
Making 'packages.html' ... done