R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 24 found.
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DEGreportSet (Package: DEGreport) : list object for DE genes betwen Male and Females

list of objects containgin counts matrix,g1,g2 and edgeR glmfit object

● Data Source: BioConductor
● Keywords:
● Alias: DEGreportSet
● 0 images

createReport (Package: DEGreport) : Create report of RNAseq DEG anlaysis

This function get the count matrix, pvalues, and FC of a DEG analysis and create a report to help to detect possible problems with the data.

● Data Source: BioConductor
● Keywords:
● Alias: createReport
● 0 images

degBI (Package: DEGreport) : Get the estimates of the fold change (FC) mean from a FC distribution using

Get the estimates of the fold change (FC) mean from a FC distribution using bayesian inference

● Data Source: BioConductor
● Keywords:
● Alias: degBI
● 0 images

degBIcmd (Package: DEGreport) : Apply bayesian inference to estimate the average fold change (FC) of

code based on http://www.johnmyleswhite.com/notebook/2010/08/20/ using-jags-in-r-with-the-rjags-package/ http://public.wsu.edu/~jesse.brunner/classes/bio572/Lab7_Bayesian.html

● Data Source: BioConductor
● Keywords:
● Alias: degBIcmd
● 0 images

degComb (Package: DEGreport) : Get random combinations of two groups

Get random combinations of two groups

● Data Source: BioConductor
● Keywords:
● Alias: degComb
● 0 images

degFC (Package: DEGreport) : get the FC for each gene between two groups

get the FC for each gene between two groups

● Data Source: BioConductor
● Keywords:
● Alias: degFC
● 0 images

degMB (Package: DEGreport) : Distribution of expression of DE genes compared to the background

Distribution of expression of DE genes compared to the background

● Data Source: BioConductor
● Keywords:
● Alias: degMB
● 1 images

degMV (Package: DEGreport) : Correlation of the standard desviation and the mean of the abundance of a

Correlation of the standard desviation and the mean of the abundance of a set of genes.

● Data Source: BioConductor
● Keywords:
● Alias: degMV
● 1 images

degMean (Package: DEGreport) : Distribution of pvalues by expression range

Distribution of pvalues by expression range

● Data Source: BioConductor
● Keywords:
● Alias: degMean
● 1 images

degNcomb (Package: DEGreport) : Get number of potential combinations of two vectors

Get number of potential combinations of two vectors

● Data Source: BioConductor
● Keywords:
● Alias: degNcomb
● 0 images