ampliQueso

Package: ampliQueso
Type: Package
Title: Analysis of amplicon enrichment panels
Version: 1.10.0
Date: 2013-08-06
Author: Alicja Szabelska <alicja.szabelska@up.poznan.pl>; Marek
Wiewiorka <marek.wiewiorka@gmail.com>; Michal Okoniewski
<michal@fgcz.ethz.ch>
Maintainer: Michal Okoniewski <michal@fgcz.ethz.ch>
Depends: R (>= 2.15.0), rnaSeqMap (>= 2.17.1), knitr, rgl, ggplot2,
gplots, parallel, doParallel, foreach,
VariantAnnotation, genefilter, statmod, xtable
Imports: edgeR, DESeq, samr
Suggests:
Description: The package provides tools and reports for the analysis of
amplicon sequencing panels, such as AmpliSeq
License: GPL-2
Collate: compareCoverages.R getCountTable.R getSNP.R auxFunctions.R
compareCoveragesRegions.R runAQReport.R getCamelTests.R
biocViews: ReportWriting, Transcription, GeneExpression,
DifferentialExpression, Sequencing, RNASeq, Visualization
NeedsCompilation: no
Packaged: 2016-05-04 05:07:46 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ampliQueso' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ampliQueso'
    finding HTML links ... done
    camelSampleTable                        html  
    camelTest                               html  
    compareCoverages                        html  
    compareCoveragesReg                     html  
    getCountTable                           html  
    getSNP                                  html  
    ndMax                                   html  
    ndMin                                   html  
    runAQReport                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ampliQueso)
Making 'packages.html' ... done