gapmap

Package: gapmap
Type: Package
Title: Functions for Drawing Gapped Cluster Heatmap with ggplot2
Version: 0.0.4
URL: https://bitbucket.org/vda-lab/gapmap
Date: 2015-12-14
Author: Ryo Sakai
Maintainer: Ryo Sakai <ryo@vda-lab.be>
Description: The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.
License: GPL-2 | GPL-3
Depends: ggplot2, reshape2
Imports: grid
Suggests: knitr, dendsort, RColorBrewer
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-14 11:44:45 UTC; ryosakai
Repository: CRAN
Date/Publication: 2015-12-14 14:15:38

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gapmap' ...
** package 'gapmap' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'gapmap'
    finding HTML links ... done
    as.gapdata                              html  
    assign_branch_positions                 html  
    assign_positions                        html  
    calculate_gap                           html  
    count_gap                               html  
    extract_list                            html  
    format_number                           html  
    gap_data                                html  
    gap_dendrogram                          html  
    gap_heatmap                             html  
    gap_label                               html  
    gapmap-package                          html  
    gapmap                                  html  
    get_most_left_leaf                      html  
    get_most_right_leaf                     html  
    get_segment_df                          html  
    is.gapdata                              html  
    map                                     html  
    map.exp                                 html  
    sample_tcga                             html  
    set_most_right_leaf                     html  
    sum_distance                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gapmap)
Making 'packages.html' ... done