iBMQ

Package: iBMQ
Type: Package
Title: integrated Bayesian Modeling of eQTL data
Version: 1.12.0
Date: 2011-10-28
Author: Marie-Pier Scott-Boyer and Greg Imholte
Maintainer: Greg Imholte <gimholte@uw.edu>
Description: integrated Bayesian Modeling of eQTL data
License: Artistic-2.0
Depends: R (>= 2.15.0), Biobase (>= 2.16.0), ggplot2 (>= 0.9.2)
biocViews: Microarray, Preprocessing, GeneExpression, SNP
URL: http://www.rglab.org
SystemRequirements: GSL and OpenMP
Packaged: 2016-05-04 04:47:55 UTC; biocbuild
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'iBMQ' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking omp.h usability... yes
checking omp.h presence... yes
checking for omp.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c ARS.c -o ARS.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RngStream.c -o RngStream.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c iBMQ_common.c -o iBMQ_common.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c main_parallel_sparse.c -o main_parallel_sparse.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c norm_gamma_generation.c -o norm_gamma_generation.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c sparse.c -o sparse.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o iBMQ.so ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -lgsl -lgslcblas -lm -lgomp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/iBMQ/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'iBMQ'
    finding HTML links ... done
    PPA.liver                               html  
    calculateThreshold                      html  
    eqtlClassifier                          html  
    eqtlFinder                              html  
    eqtlMcmc                                html  
    gene                                    html  
    genepos                                 html  
    genotype.liver                          html  
    hotspotFinder                           html  
    iBMQ-package                            html  
    map.liver                               html  
    phenotype.liver                         html  
    probe.liver                             html  
    snp                                     html  
    snppos                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iBMQ)
Making 'packages.html' ... done