mlr

Package: mlr
Title: Machine Learning in R
Description: Interface to a large number of classification and regression
techniques, including machine-readable parameter descriptions. There is
also an experimental extension for survival analysis, clustering and
general, example-specific cost-sensitive learning. Generic resampling,
including cross-validation, bootstrapping and subsampling. Hyperparameter
tuning with modern optimization techniques, for single- and multi-objective
problems. Filter and wrapper methods for feature selection. Extension of
basic learners with additional operations common in machine learning, also
allowing for easy nested resampling. Most operations can be parallelized.
Authors@R: c(person("Bernd", "Bischl", email = "bernd_bischl@gmx.net", role =
c("aut", "cre")), person("Michel", "Lang", email =
"michellang@gmail.com", role = "aut"), person("Jakob", "Richter", email =
"code@jakob-r.de", role = "aut"), person("Jakob", "Bossek",
email = "jakob.bossek@tu-dortmund.de", role = "aut"), person("Leonard",
"Judt", email = "leonard.judt@tu-dortmund.de", role = "aut"),
person("Tobias", "Kuehn", email = "tobi.kuehn@gmx.de", role = "aut"),
person("Erich", "Studerus", email = "erich.studerus@upkbs.ch", role =
"aut"), person("Lars", "Kotthoff", email =
"larsko@cs.ubc.ca", role = "aut"), person("Zachary", "Jones", email =
"zmj@zmjones.com", role = "ctb"), person("Schiffner", "Julia", email =
"schiffner@math.uni-duesseldorf.de", role = "aut"))
URL: https://github.com/mlr-org/mlr
BugReports: https://github.com/mlr-org/mlr/issues
License: BSD_2_clause + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.0.2), BBmisc (>= 1.9), ggplot2, ParamHelpers (>= 1.7),
stats
Imports: checkmate (>= 1.7.1), ggvis, methods, parallelMap (>= 1.3),
plyr, reshape2, shiny, survival
Suggests: ada, adabag, bartMachine, brnn, bst, care, caret (>= 6.0-57),
class, clue, cluster, clusterSim, clValid, cmaes, CoxBoost,
crs, Cubist, deepnet, DiceKriging, DiceOptim, DiscriMiner,
e1071, earth, elasticnet, elmNN, emoa, extraTrees, flare,
fields, FNN, fpc, frbs, FSelector, gbm, GenSA, glmnet, Hmisc,
irace (>= 1.0.7), kernlab, kknn, klaR, knitr, kohonen, laGP,
LiblineaR, lqa, MASS, mboost, mco, mda, mlbench, modeltools,
mRMRe, nnet, nodeHarvest (>= 0.7-3), neuralnet, numDeriv, pamr,
party, penalized, pls, PMCMR, pROC (>= 1.8), randomForest,
randomForestSRC (>= 2.0.5), ranger (>= 0.3.0), RCurl, rFerns,
rjson, rknn, rmarkdown, robustbase, ROCR, rotationForest,
rpart, rrlda, rsm, RSNNS, RWeka, sda, sparsediscrim, sparseLDA,
stepPlr, SwarmSVM, testthat, tgp, TH.data, xgboost, XML
LazyData: yes
ByteCompile: yes
Version: 2.8
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-02-12 14:47:04 UTC; bischl
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Richter [aut],
Jakob Bossek [aut],
Leonard Judt [aut],
Tobias Kuehn [aut],
Erich Studerus [aut],
Lars Kotthoff [aut],
Zachary Jones [ctb],
Schiffner Julia [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Repository: CRAN
Date/Publication: 2016-02-13 08:37:35

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mlr' ...
** package 'mlr' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c smote.c -o smote.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o mlr.so smote.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/mlr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mlr'
    finding HTML links ... done
    Aggregation                             html  
    BenchmarkResult                         html  
    FailureModel                            html  
    FeatSelControl                          html  
    FeatSelResult                           html  
    LearnerProperties                       html  
    Prediction                              html  
    RLearner                                html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/RLearner.Rd:49: missing file link 'ParamSet'
    ResamplePrediction                      html  
    ResampleResult                          html  
    Task                                    html  
    TaskDesc                                html  
    TuneControl                             html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/TuneControl.Rd:141: missing file link 'makeDiscreteParam'
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/TuneControl.Rd:154: missing file link 'irace'
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/TuneControl.Rd:164: missing file link 'irace'
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/TuneControl.Rd:104: missing file link 'irace'
    TuneMultiCritControl                    html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/TuneMultiCritControl.Rd:91: missing file link 'makeDiscreteParam'
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/TuneMultiCritControl.Rd:75: missing file link 'irace'
    TuneMultiCritResult                     html  
    TuneResult                              html  
    aggregations                            html  
    agri.task                               html  
    analyzeFeatSelResult                    html  
    asROCRPrediction                        html  
    bc.task                                 html  
    benchmark                               html  
    bh.task                                 html  
    capLargeValues                          html  
    configureMlr                            html  
    convertBMRToRankMatrix                  html  
    convertMLBenchObjToTask                 html  
    costiris.task                           html  
    createDummyFeatures                     html  
    crossover                               html  
    downsample                              html  
    dropFeatures                            html  
    estimateRelativeOverfitting             html  
    estimateResidualVariance                html  
    filterFeatures                          html  
    friedmanPostHocTestBMR                  html  
    friedmanTestBMR                         html  
    generateCalibrationData                 html  
    generateCritDifferencesData             html  
    generateFilterValuesData                html  
    generateLearningCurveData               html  
    generatePartialPredictionData           html  
    generateThreshVsPerfData                html  
    getBMRAggrPerformances                  html  
    getBMRFeatSelResults                    html  
    getBMRFilteredFeatures                  html  
    getBMRLearnerIds                        html  
    getBMRLearnerShortNames                 html  
    getBMRLearners                          html  
    getBMRMeasureIds                        html  
    getBMRMeasures                          html  
    getBMRModels                            html  
    getBMRPerformances                      html  
    getBMRPredictions                       html  
    getBMRTaskIds                           html  
    getBMRTuneResults                       html  
    getCaretParamSet                        html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/getCaretParamSet.Rd:40: missing file link 'ParamSet'
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/getCaretParamSet.Rd:32: missing file link 'ParamSet'
    getClassWeightParam                     html  
    finding level-2 HTML links ... done

    getConfMatrix                           html  
    getDefaultMeasure                       html  
    getFailureModelMsg                      html  
    getFeatSelResult                        html  
    getFilterValues                         html  
    getFilteredFeatures                     html  
    getHomogeneousEnsembleModels            html  
    getHyperPars                            html  
    getLearnerModel                         html  
    getMlrOptions                           html  
    getMultilabelBinaryPerformances         html  
    getNestedTuneResultsOptPathDf           html  
    getNestedTuneResultsX                   html  
    getParamSet                             html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/getParamSet.Rd:15: missing file link 'ParamSet'
    getPredictionProbabilities              html  
    getPredictionResponse                   html  
    getProbabilities                        html  
    getRRPredictions                        html  
    getStackedBaseLearnerPredictions        html  
    getTaskClassLevels                      html  
    getTaskCosts                            html  
    getTaskData                             html  
    getTaskDescription                      html  
    getTaskFeatureNames                     html  
    getTaskFormula                          html  
    getTaskId                               html  
    getTaskNFeats                           html  
    getTaskSize                             html  
    getTaskTargetNames                      html  
    getTaskTargets                          html  
    getTaskType                             html  
    getTuneResult                           html  
    hasProperties                           html  
    imputations                             html  
    impute                                  html  
    iris.task                               html  
    isFailureModel                          html  
    joinClassLevels                         html  
    learnerArgsToControl                    html  
    learners                                html  
    listFilterMethods                       html  
    listLearners                            html  
    listMeasures                            html  
    lung.task                               html  
    makeAggregation                         html  
    makeBaggingWrapper                      html  
    makeCostMeasure                         html  
    makeCostSensClassifWrapper              html  
    makeCostSensRegrWrapper                 html  
    makeCostSensWeightedPairsWrapper        html  
    makeCustomResampledMeasure              html  
    makeDownsampleWrapper                   html  
    makeFeatSelWrapper                      html  
    makeFilter                              html  
    makeFilterWrapper                       html  
    makeFixedHoldoutInstance                html  
    makeImputeMethod                        html  
    makeImputeWrapper                       html  
    makeLearner                             html  
    makeMeasure                             html  
    makeModelMultiplexer                    html  
    makeModelMultiplexerParamSet            html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/makeModelMultiplexerParamSet.Rd:13: missing file link 'ParamSet'
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/makeModelMultiplexerParamSet.Rd:26: missing file link 'ParamSet'
    makeMulticlassWrapper                   html  
    makeMultilabelBinaryRelevanceWrapper    html  
    makeOverBaggingWrapper                  html  
    makePreprocWrapper                      html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/makePreprocWrapper.Rd:30: missing file link 'ParamSet'
    makePreprocWrapperCaret                 html  
    makeResampleDesc                        html  
    makeResampleInstance                    html  
    makeSMOTEWrapper                        html  
    makeStackedLearner                      html  
    makeTuneWrapper                         html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/makeTuneWrapper.Rd:26: missing file link 'ParamSet'
    makeUndersampleWrapper                  html  
    makeWeightedClassesWrapper              html  
    makeWrappedModel                        html  
    measures                                html  
    mergeBenchmarkResultLearner             html  
    mergeBenchmarkResultTask                html  
    mergeSmallFactorLevels                  html  
    mtcars.task                             html  
    normalizeFeatures                       html  
    oversample                              html  
    performance                             html  
    pid.task                                html  
    plotBMRBoxplots                         html  
    plotBMRRanksAsBarChart                  html  
    plotBMRSummary                          html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/plotBMRSummary.Rd:42: missing file link 'scale_x_log10'
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/plotBMRSummary.Rd:21: missing file link 'scale_x_log10'
    plotCalibration                         html  
    plotCritDifferences                     html  
    plotFilterValues                        html  
    plotFilterValuesGGVIS                   html  
    plotLearnerPrediction                   html  
    plotLearningCurve                       html  
    plotLearningCurveGGVIS                  html  
    plotPartialPrediction                   html  
    plotPartialPredictionGGVIS              html  
    plotROCCurves                           html  
    plotThreshVsPerf                        html  
    plotThreshVsPerfGGVIS                   html  
    plotTuneMultiCritResult                 html  
    plotTuneMultiCritResultGGVIS            html  
    plotViperCharts                         html  
    predict.WrappedModel                    html  
    predictLearner                          html  
    regr.randomForest                       html  
    reimpute                                html  
    removeConstantFeatures                  html  
    removeHyperPars                         html  
    resample                                html  
    selectFeatures                          html  
    setAggregation                          html  
    setHyperPars                            html  
    setHyperPars2                           html  
    setId                                   html  
    setPredictThreshold                     html  
    setPredictType                          html  
    setThreshold                            html  
    smote                                   html  
    sonar.task                              html  
    subsetTask                              html  
    summarizeColumns                        html  
    summarizeLevels                         html  
    train                                   html  
    trainLearner                            html  
    tuneParams                              html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/tuneParams.Rd:29: missing file link 'ParamSet'
    tuneParamsMultiCrit                     html  
Rd warning: /tmp/Rtmplqa3vC/R.INSTALL6b891d935751/mlr/man/tuneParamsMultiCrit.Rd:27: missing file link 'ParamSet'
    tuneThreshold                           html  
    wpbc.task                               html  
    yeast.task                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mlr)
Making 'packages.html' ... done