waveTiling

Package: waveTiling
Version: 1.14.0
Date: 2012-05-14
License: GPL (>=2)
Title: Wavelet-Based Models for Tiling Array Transcriptome Analysis
Author: Kristof De Beuf <kristof.debeuf@UGent.be>, Peter Pipelers
<peter.pipelers@ugent.be> and Lieven Clement
<lieven.clement@gmail.com>
Maintainer: Kristof De Beuf <kristof.debeuf@UGent.be>
Depends: oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs
Imports: methods, affy, preprocessCore, GenomicRanges, waveslim,
IRanges
Suggests: BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData,
pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart22
Description: This package is designed to conduct transcriptome analysis
for tiling arrays based on fast wavelet-based functional
models.
Collate: allClasses.R allGenerics.R helperFunctions.R
initialize-methods.R methods-MapFilterProbe.R
methods-WaveTilingFeatureSet.R methods-WfmFit.R
methods-WfmInf.R show-methods.R
URL: https://r-forge.r-project.org/projects/wavetiling/
LazyLoad: yes
LazyData:
Packaged: 2016-05-04 04:40:22 UTC; biocbuild
biocViews: Microarray, DifferentialExpression, TimeCourse,
GeneExpression
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'waveTiling' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c waveTiling.c -o waveTiling.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o waveTiling.so waveTiling.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/waveTiling/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'waveTiling'
    finding HTML links ... done
    GenomeInfo-class                        html  
    MapFilterProbe-class                    html  
    WaveTilingFeatureSet-class              html  
    finding level-2 HTML links ... done

    WfmFit-class                            html  
    WfmFitCircadian-class                   html  
    WfmFitCustom-class                      html  
    WfmFitFactor-class                      html  
    WfmFitTime-class                        html  
    WfmInf-class                            html  
    WfmInfCompare-class                     html  
    WfmInfCustom-class                      html  
    WfmInfEffects-class                     html  
    WfmInfMeans-class                       html  
    WfmInfOverallMean-class                 html  
    addPheno                                html  
    bgCorrQn                                html  
    cel2TilingFeatureSet                    html  
    filterOverlap                           html  
    getNonAnnotatedRegions                  html  
    getSigGenes                             html  
    makeContrasts                           html  
    makeDesign                              html  
    plotWfm                                 html  
    selectProbesFromFilterOverlap           html  
    selectProbesFromTilingFeatureSet        html  
    wfm.fit                                 html  
    wfm.inference                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (waveTiling)
Making 'packages.html' ... done