Package: ldlasso
Type: Package
Title: LD LASSO Regression for SNP Association Study
Version: 3.2
Date: Jan. 2, 2013
Author: Samuel G. Younkin
Maintainer: Samuel G. Younkin <samuel.younkin@gmail.com>
Description: ldlasso requires data be of class gwaa.data from the the
package GenABEL
License: GPL (>= 2)
Depends: R (>= 2.6.0), GenABEL, quadprog
LazyLoad: yes
Packaged: 2013-01-02 20:20:29 UTC; sgy
Repository: CRAN
Date/Publication: 2013-01-03 08:23:20
Package: Haplin
Title: Analyzing Case-Parent Triad and/or Case-Control Data with SNP
Haplotypes
Version: 6.0.1
Date: 2016-05-25
Type: Package
Author: Hakon K. Gjessing
Maintainer: Hakon K. Gjessing <hakon.gjessing@fhi.no>
Depends: GenABEL, DatABEL
Imports: utils, stats, graphics, grDevices, parallel, tools, mgcv, MASS, SuppDists, snow
Description: Performs genetic association analyses of case-parent triad (trio) data with multiple markers. It can also incorporate complete or incomplete control triads, for instance independent control children. Estimation is based on haplotypes, for instance SNP haplotypes, even though phase is not known from the genetic data. Haplin estimates relative risk (RR + conf.int.) and p-value associated with each haplotype. It uses maximum likelihood estimation to make optimal use of data from triads with missing genotypic data, for instance if some SNPs has not been typed for some individuals. Haplin also allows estimation of effects of maternal haplotypes and parent-of-origin effects, particularly appropriate in perinatal epidemiology. Haplin allows special models, like X-inactivation, to be fitted on the X-chromosome. A GxE analysis allows testing interactions between environment and all estimated genetic effects.
License: GPL (>= 2)
URL: http://folk.uib.no/gjessing/genetics/software/haplin/
NeedsCompilation: no
Packaged: 2016-05-25 17:09:49 UTC; hkgjess
Repository: CRAN
Date/Publication: 2016-05-26 17:44:32
Package: RepeatABEL
Type: Package
Title: GWAS for Multiple Observations on Related Individuals
Version: 1.0
Date: 2015-11-23
Author: Lars Ronnegard
Maintainer: Lars Ronnegard <lrn@du.se>
Description: Performs genome-wide association studies on individuals that are both related and have repeated measurements.
License: GPL
Imports: methods, stats
Depends: R (>= 2.10), hglm, GenABEL
Packaged: 2015-11-24 07:28:52 UTC; lars
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-11-24 15:03:54
providing 
.