CompGO : An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation

Package: CompGO
Title: An R pipeline for .bed file annotation, comparing GO term
enrichment between gene sets and data visualisation
Description: This package contains functions to accomplish several tasks. It is
able to download full genome databases from UCSC, import .bed files easily,
annotate these .bed file regions with genes (plus distance) from
aforementioned database dumps, interface with DAVID to create functional
annotation and gene ontology enrichment charts based on gene lists (such as
those generated from input .bed files) and finally visualise and compare
these enrichments using either directed acyclic graphs or scatterplots.
Version: 1.8.0
Authors@R: c(person("Sam D.", "Bassett", role = 'aut',
email='S.Bassett@victorchang.edu.au'),
person("Ashley J.", "Waardenberg", role=c('aut', 'cre'),
email='A.Waardenberg@victorchang.edu.au'))
License: GPL-2
Depends: RDAVIDWebService
Imports: rtracklayer, Rgraphviz, ggplot2, GenomicFeatures,
TxDb.Mmusculus.UCSC.mm9.knownGene, pcaMethods, reshape2,
pathview
biocViews: GeneSetEnrichment, MultipleComparison, GO, Visualization
NeedsCompilation: no
Packaged: 2016-05-04 05:23:46 UTC; biocbuild
Author: Sam D. Bassett [aut],
Ashley J. Waardenberg [aut, cre]
Maintainer: Ashley J. Waardenberg <A.Waardenberg@victorchang.edu.au>