pathview : a tool set for pathway based data integration and visualization

Package: pathview
Type: Package
Title: a tool set for pathway based data integration and visualization
Version: 1.12.0
Date: 2016-05-03
Author: Weijun Luo
Maintainer: Weijun Luo <luo_weijun@yahoo.com>
Description: Pathview is a tool set for pathway based data integration
and visualization. It maps and renders a wide variety of
biological data on relevant pathway graphs. All users need is
to supply their data and specify the target pathway. Pathview
automatically downloads the pathway graph data, parses the data
file, maps user data to the pathway, and render pathway graph
with the mapped data. In addition, Pathview also seamlessly
integrates with pathway and gene set (enrichment) analysis tools for
large-scale and fully automated analysis.
biocViews: Pathways, GraphAndNetwork, Visualization, GeneSetEnrichment,
DifferentialExpression, GeneExpression, Microarray, RNASeq,
Genetics, Metabolomics, Proteomics, SystemsBiology, Sequencing
Depends: R (>= 2.10), org.Hs.eg.db
Imports: KEGGgraph, XML, Rgraphviz, graph, png, AnnotationDbi,
KEGGREST, methods, utils
Suggests: gage, org.Mm.eg.db, RUnit, BiocGenerics
License: GPL (>=3.0)
URL: http://pathview.uncc.edu/
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-04 04:54:40 UTC; biocbuild