R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Results 1 - 2 of 2 found.
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NSA : Post-normalization of total copy numbers

Package: NSA
Version: 0.0.32
Date: 2012-12-20
Title: Post-normalization of total copy numbers
Author: Maria Ortiz-Estevez <mortizest@gmail.com>, Ander Aranburu
<aaranburu@ceit.es>, Angel Rubio <arubio@ceit.es>
Maintainer: Maria Ortiz-Estevez <mortizest@gmail.com>
Depends: R (>= 2.11.1), R.methodsS3 (>= 1.2.0), MASS, matrixStats (>=
0.2.1), R.oo (>= 1.7.3), R.utils (>= 1.4.2), aroma.core (>=
1.6.0), aroma.affymetrix, DNAcopy
Description: Post-normalization of total copy-number estimates.
License: LGPL (>= 2.1)
URL: http://r-forge.r-project.org/projects/snpsprocessing/
LazyLoad: TRUE
biocViews: Infrastructure, Microarray, DNACopyNumber, Preprocessing,
aCGH, SNP, CopyNumberVariants
Repository: CRAN
Repository/R-Forge/Project: snpsprocessing
Repository/R-Forge/Revision: 202
Repository/R-Forge/DateTimeStamp: 2012-12-20 19:24:38
Date/Publication: 2012-12-21 09:17:05
Packaged: 2012-12-20 23:15:21 UTC; rforge

● Data Source: CranContrib
● BiocViews: CopyNumberVariants, DNACopyNumber, Infrastructure, Microarray, Preprocessing, SNP, aCGH
● 0 images, 11 functions, 0 datasets
● Reverse Depends: 0

ACNE : Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

Package: ACNE
Version: 0.8.1
Depends: R (>= 3.0.0), aroma.affymetrix (>= 2.14.0)
Imports: MASS, R.methodsS3 (>= 1.7.0), R.oo (>= 1.19.0), R.utils (>=
2.1.0), matrixStats (>= 0.14.2), R.filesets (>= 2.9.0),
aroma.core (>= 2.14.0)
Suggests: DNAcopy
Date: 2015-10-26
Title: Affymetrix SNP Probe-Summarization using Non-Negative Matrix
Factorization
Authors@R: c(
person("Maria", "Ortiz", role=c("aut")),
person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"),
email="henrikb@braju.com"),
person("Angel", "Rubio", role=c("aut")))
Description: A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
License: LGPL (>= 2.1)
URL: https://github.com/HenrikBengtsson/ACNE
BugReports: https://github.com/HenrikBengtsson/ACNE/issues
LazyLoad: TRUE
biocViews: aCGH, CopyNumberVariants, SNP, Microarray, OneChannel,
TwoChannel, Genetics
NeedsCompilation: no
Packaged: 2015-10-27 03:03:12 UTC; hb
Author: Maria Ortiz [aut],
Henrik Bengtsson [aut, cre, cph],
Angel Rubio [aut]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Repository: CRAN
Date/Publication: 2015-10-27 08:09:51

● Data Source: CranContrib
● BiocViews: CopyNumberVariants, Genetics, Microarray, OneChannel, SNP, TwoChannel, aCGH
● 6 images, 14 functions, 0 datasets
● Reverse Depends: 0