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Last data update: 2014.03.03

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qrqc : Quick Read Quality Control

Package: qrqc
Version: 1.26.0
Date: 2012-04-17
Title: Quick Read Quality Control
Author: Vince Buffalo
Maintainer: Vince Buffalo <vsbuffalo@ucdavis.edu>
Imports: reshape, ggplot2, Biostrings, biovizBase, graphics, methods,
plyr, stats
Depends: reshape, ggplot2, Biostrings, biovizBase, brew, xtable,
Rsamtools (>= 1.19.38), testthat
LinkingTo: Rsamtools
Description: Quickly scans reads and gathers statistics on base and
quality frequencies, read length, k-mers by position, and
frequent sequences. Produces graphical output of statistics for
use in quality control pipelines, and an optional HTML quality
report. S4 SequenceSummary objects allow specific tests and
functionality to be written around the data collected.
License: GPL (>=2)
URL: http://github.com/vsbuffalo/qrqc
biocViews: Sequencing, QualityControl, DataImport, Preprocessing,
Visualization
NeedsCompilation: yes
Packaged: 2016-05-04 04:01:43 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: DataImport, Preprocessing, QualityControl, Sequencing, Visualization
● 29 images, 27 functions, 0 datasets
● Reverse Depends: 0

CAFE : Chromosmal Aberrations Finder in Expression data

Package: CAFE
Type: Package
Title: Chromosmal Aberrations Finder in Expression data
Version: 1.8.0
Date: 2014-03-16
Author: Sander Bollen
Maintainer: Sander Bollen <sander.h.bollen@gmail.com>
Depends: R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports: affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
Suggests: RUnit, BiocGenerics, BiocStyle
Description: Detection and visualizations of gross chromosomal
aberrations using Affymetrix expression microarrays as input
License: GPL-3
ByteCompile: true
biocViews: GeneExpression, Microarray, OneChannel, GeneSetEnrichment
Collate: microProcess-improve.R selectSamples.R chromosomeStats.R
rawPlot.R slidPlot.R discontPlot.R facetPlot.R
NeedsCompilation: no
Packaged: 2016-05-04 05:21:43 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: GeneExpression, GeneSetEnrichment, Microarray, OneChannel
● 0 images, 14 functions, 1 datasets
● Reverse Depends: 0