Package: genetics
Title: Population Genetics
Version: 1.3.8.1
Date: 2012-11-26
Author: Gregory Warnes, with contributions from Gregor Gorjanc,
Friedrich Leisch, and Michael Man.
Maintainer: Gregory Warnes <greg@warnes.net>
Depends: combinat, gdata, gtools, MASS, mvtnorm
Description: Classes and methods for handling genetic data. Includes
classes to represent genotypes and haplotypes at single markers
up to multiple markers on multiple chromosomes. Function
include allele frequencies, flagging homo/heterozygotes,
flagging carriers of certain alleles, estimating and testing
for Hardy-Weinberg disequilibrium, estimating and testing for
linkage disequilibrium, ...
biocViews: Genetics
License: GPL
Packaged: 2013-09-03 10:04:45 UTC; ripley
Repository: CRAN
Date/Publication: 2013-09-03 12:06:28
NeedsCompilation: no
Package: NSM3
Type: Package
Version: 1.5
Date: 2016-04-15
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <schneider.393@osu.edu>
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
License: GPL-2
LazyLoad: yes
Depends: R (>= 2.10), combinat, MASS, partitions, stats, survival
Imports: agricolae, ash, binom, BSDA, coin, epitools, fANCOVA, gtools, Hmisc, km.ci, metafor, nortest, np, quantreg, Rfit, SemiPar, SuppDists, waveslim
NeedsCompilation: yes
Repository: CRAN
Packaged: 2016-04-15 17:03:25 UTC; grant
Date/Publication: 2016-04-16 04:39:52
Package: PoissonSeq
Type: Package
Title: Significance analysis of sequencing data based on a Poisson log
linear model
Version: 1.1.2
Date: 2012-10-9
Depends: R (>= 2.10), combinat, splines
Author: Jun Li
Maintainer: Jun Li <jun.li@nd.edu>
Description: This package implements a method for normalization,
testing, and false discovery rate estimation for RNA-sequencing
data. The description of the method is in Li J, Witten DM,
Johnstone I, Tibshirani R (2012). Normalization, testing, and
false discovery rate estimation for RNA-sequencing data.
Biostatistics 13(3): 523-38. We estimate the sequencing depths
of experiments using a new method based on Poisson
goodness-of-fit statistic, calculate a score statistic on the
basis of a Poisson log-linear model, and then estimate the
false discovery rate using a modified version of permutation
plug-in method. A more detailed instruction as well as sample
data is available at
http://www.stanford.edu/~junli07/research.html. In this
version, we changed the way of calculating log foldchange for
two-class data. The FDR estimation part remains unchanged.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-10-10 04:33:20 UTC; jli9
Repository: CRAN
Date/Publication: 2012-10-10 15:36:34
Package: GameTheory
Type: Package
Title: Cooperative Game Theory
Version: 2.0
Date: 2015-07-15
Author: Sebastian Cano-Berlanga
Maintainer: Sebastian Cano-Berlanga <cano.berlanga@gmail.com>
Depends: lpSolveAPI, combinat, gtools, ineq, kappalab
Description: Implementation of a common set of punctual solutions for Cooperative Game Theory.
License: GPL (>= 2)
URL: http://canoberlanga.com
Suggests: R.rsp
VignetteBuilder: R.rsp
Repository: CRAN
Packaged: 2015-08-10 16:55:22 UTC; sebastian
NeedsCompilation: no
Date/Publication: 2015-08-10 19:22:22
Package: fcd
Type: Package
Title: Fused Community Detection
Version: 0.1
Date: 2013-12-27
Author: Yang Feng, Richard J. Samworth and Yi Yu
Maintainer: Yi Yu <y.yu@statslab.cam.ac.uk>
Depends: R (>= 2.15.1), glmnet, MASS, combinat
Description: Efficient procedures for community detection in network studies, especially for sparse networks with not very obvious community structure. The algorithms impose penalties on the differences of the coordinates which represent the community labels of the nodes.
License: GPL (>= 2.0)
LazyLoad: yes
Packaged: 2013-12-15 16:45:53 UTC; Yi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-12-15 17:52:32
providing 
.