Package: PropClust
Type: Package
Title: Propensity Clustering and Decomposition
Version: 1.4-2
Date: 2013-12-18
Author: John Michael O Ranola, Kenneth Lange, Steve Horvath, Peter Langfelder
Maintainer: Peter Langfelder <Peter.Langfelder@gmail.com>
Depends: R (>= 2.10), flashClust, dynamicTreeCut
Description: This package implements propensity clustering and
decomposition. Propensity decomposition can be viewed on the
one hand as a generalization of the eigenvector-based
approximation of correlation networks, and on the other hand as
a generalization of random multigraph models and
conformity-based decompositions.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2013-12-18 17:40:30 UTC; plangfelder
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-12-18 19:08:45
Package: WGCNA
Version: 1.51
Date: 2016-03-08
Title: Weighted Correlation Network Analysis
Author: Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu> with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang
Maintainer: Peter Langfelder <Peter.Langfelder@gmail.com>
Depends: R (>= 3.0), dynamicTreeCut (>= 1.62), fastcluster
Imports: stats, grDevices, utils, matrixStats (>= 0.8.1), Hmisc, impute, splines, foreach, doParallel, preprocessCore, survival, parallel, GO.db, AnnotationDbi
Suggests: org.Hs.eg.db, org.Mm.eg.db, infotheo, entropy, minet
ZipData: no
License: GPL (>= 2)
Description: Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
URL:
http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/
NeedsCompilation: yes
Packaged: 2016-03-14 22:18:51 UTC; plangfelder
Repository: CRAN
Date/Publication: 2016-03-15 00:24:08
Package: allelematch
Type: Package
Title: Identifying unique multilocus genotypes where genotyping error
and missing data may be present
Version: 2.5
Date: 2014-09-18
Author: Paul Galpern <pgalpern@gmail.com>
Maintainer: Paul Galpern <pgalpern@gmail.com>
Description: This package provides tools for the identification of unique of multilocus genotypes when both genotyping error and missing data may be present. The package is targeted at those working with large datasets and databases containing multiple samples of each individual, a situation that is common in conservation genetics, and particularly in non-invasive wildlife sampling applications. Functions explicitly incorporate missing data, and can tolerate allele mismatches created by genotyping error. If you use this tool, please cite the package using the journal article in Molecular Ecology Resources (Galpern et al., 2012). Please use citation('allelematch') to find this. Due to changing CRAN policy, and the size and compile time of the vignettes, they can no longer be distributed with this package. Please contact the package primary author, or visit the allelematch site for a complete vignette (http://nricaribou.cc.umanitoba.ca/allelematch/). For users with access to academic literature, tutorial material is also available as supplementary material to the article describing this software.
License: GPL (>= 2)
Depends: dynamicTreeCut
URL: http://nricaribou.cc.umanitoba.ca/allelematch/
LazyLoad: yes
Packaged: 2014-09-18 15:54:15 UTC; pgalpern
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 00:14:49
providing 
.