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Last data update: 2014.03.03

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Results 1 - 2 of 2 found.
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mvSLOUCH : Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Package: mvSLOUCH
Type: Package
Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Version: 1.3.2
Date: 2015-07-16
Author: Krzysztof Bartoszek <bartoszekkj@gmail.com>
Maintainer: Krzysztof Bartoszek <bartoszekkj@gmail.com>
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history.
Depends: R (>= 2.9.1), ouch, ape, numDeriv, mvtnorm, corpcor
License: GPL (>= 2) | file LICENCE
LazyLoad: yes
Collate: regimes.R treeDists.R grid.R matrixexps.R
matrixparametrizations.R modelparamstransform.R precalcs.R
sdemoments.R sdemomentsphyl.R loglik.R ci.R phylgls.R
modelparamssummary.R modelparams.R estimBM.R estimGLSGC.R
estimMAXLIK.R simulVasicekproc.R simulVasicekprocphyl.R
PhyloSDEestim.R MVslouchSimulStudy.R wrappers.R fitch.mvsl.R
ouch2slouch.mvsl.R make.states.mvsl.R evolmodelest.R getESS.R
Imports: methods
Packaged: 2016-06-06 16:58:03 UTC; bart
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-06-06 20:25:26

● Data Source: CranContrib
● 0 images, 15 functions, 0 datasets
● Reverse Depends: 0

surface : Fitting Hansen Models to Investigate Convergent Evolution

Package: surface
Type: Package
Title: Fitting Hansen Models to Investigate Convergent Evolution
Version: 0.4-1
Date: 2014-02-14
Author: Travis Ingram
Maintainer: Travis Ingram <travis.ingram@otago.ac.nz>
Depends: R (>= 2.6), ape, ouch, MASS, geiger
Suggests: igraph
Description: SURFACE is a data-driven phylogenetic comparative method for fitting stabilizing selection models to continuous trait data, building on the ouch package. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak.
License: GPL (>= 2)
URL: http://www.people.fas.harvard.edu/~ingram/web/surface.html
Packaged: 2014-02-14 09:32:26 UTC; ingram
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-14 11:22:36

● Data Source: CranContrib
● Cran Task View: Phylogenetics
● 0 images, 15 functions, 1 datasets
● Reverse Depends: 0