R Graphical Manual

Last data update: 2014.03.03

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GGBase : infrastructure for genetics of gene expression (c) 2008 VJ Carey

Package: GGBase
Title: infrastructure for genetics of gene expression (c) 2008 VJ Carey
Version: 3.16.0
Author: Vince Carey <stvjc@channing.harvard.edu>
Description: infrastructure for dealing with hapmap SNP reports, GWAS, etc.
Depends: R (>= 2.13.0), methods, BiocGenerics, Biobase (>= 2.13.0),
snpStats(>= 1.1.10), RSQLite, genefilter
Imports: methods, BiocGenerics, AnnotationDbi
Suggests: illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20090506
LazyLoad: yes
biocViews: SNP, GeneticVariability, Genetics, Bioinformatics
Maintainer: Vince Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
Collate: AllClasses.R testOutputClasses.R snpLocs.Hsapiens.R
ScreenResult-methods.R snpLocs-methods.R smlSet-methods.R snpsNear.R
pedinf2df.R isCis.R snpFilters.R featureFilter.R make_smlSet.R zzz.R

● Data Source: BioConductor
● BiocViews: Bioinformatics, GeneticVariability, Genetics, SNP
● 1 images, 7 functions, 0 datasets
● Reverse Depends: 9

GGdata : all 90 hapmap CEU samples, 47K expression, 4mm SNP

Package: GGdata
Title: all 90 hapmap CEU samples, 47K expression, 4mm SNP
Description: data exemplars dealing with hapmap SNP reports, GWAS, etc.
Version: 1.10.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
biocViews: ExperimentData, HapMap, Genome, SequencingData,
MicroarrayData, SNPData
Depends: R (>= 2.12.0), methods, Biobase (>= 2.5.5), GGBase, snpStats,
illuminaHumanv1.db, AnnotationDbi
Enhances: GGtools
LazyLoad: yes
License: LGPL
NeedsCompilation: no
Packaged: 2016-05-07 20:11:26 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: ExperimentData, Genome, HapMap, MicroarrayData, SNPData, SequencingData
● 0 images, 1 functions, 0 datasets
● Reverse Depends: 0