PADOG : Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

Package: PADOG
Version: 1.14.0
Date: 2015-03-20
Title: Pathway Analysis with Down-weighting of Overlapping Genes
(PADOG)
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>; Zhonghui Xu <zhonghui.xu@gmail.com>
Depends: R (>= 3.0.0), KEGGdzPathwaysGEO, methods, Biobase
Suggests: doParallel, parallel
Maintainer: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Description: This package implements a general purpose gene set
analysis method called PADOG that downplays the importance of
genes that apear often accross the sets of genes to be
analyzed. The package provides also a benchmark for gene set
analysis methods in terms of sensitivity and ranking using 24
public datasets from KEGGdzPathwaysGEO package.
License: GPL (>= 2)
URL:
Collate: padog.R compPADOG.R filteranot.R
Imports: limma, AnnotationDbi, GSA, foreach, doRNG, hgu133plus2.db,
hgu133a.db, KEGG.db, nlme
LazyLoad: yes
biocViews: Microarray, OneChannel, TwoChannel
NeedsCompilation: no
Packaged: 2016-05-04 04:40:58 UTC; biocbuild