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Package: SeqVarTools
Version: 1.10.0
Type: Package
Title: Tools for variant data
Description: An interface to the fast-access storage format for VCF
data provided in SeqArray, with tools for common operations and
analysis.
Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp
Maintainer: Stephanie M. Gogarten <sdmorris@u.washington.edu>, Xiuwen
Zheng <zhengx@u.washington.edu>, Adrienne Stilp <amstilp@u.washington.edu>
Depends: SeqArray (>= 1.11.17)
Imports: methods, stringr, gdsfmt, GenomicRanges, IRanges, S4Vectors,
GWASExactHW, VariantAnnotation, Biobase, logistf
Suggests: BiocGenerics, BiocStyle, RUnit
License: GPL-3
LazyData: yes
biocViews: SNP, GeneticVariability, Sequencing, Genetics
Collate: AllClasses.R AllGenerics.R AllUtilities.R
Methods-SeqVarGDSClass.R Methods-SeqVarData.R
duplicateDiscordance.R hwe.R inbreedCoeff.R mendelErr.R pca.R
setVariantID.R alternateAlleleDetection.R refFrac.R
regression.R
NeedsCompilation: no
Packaged: 2016-05-04 05:02:59 UTC; biocbuild
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providing 
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