reactome.db
(Package: reactome.db) :
Bioconductor annotation data package
Welcome to the reactome.db annotation Package. The purpose of this package is to provide detailed information about the latest version of the Reactome database. This package is updated biannually.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: reactome, reactome.db
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reactomeEXTID2PATHID
(Package: reactome.db) :
An annotation data object that maps Entrez Gene identifiers to Reactome pathway identifiers
reactomeEXTID2PATHID maps Entrez Gene identifiers to Reactome pathway identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: reactomeEXTID2PATHID
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reactomeGO2REACTOMEID
(Package: reactome.db) :
An annotation data object that maps Gene Ontology (GO) identifiers to
reactomeGO2REACTOMEID maps GO identifiers to Reactome database identifiers
● Data Source:
BioConductor
● Keywords: datasets
● Alias: reactomeGO2REACTOMEID
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reactomeMAPCOUNTS
(Package: reactome.db) :
Number of mapped keys for the maps in package reactome.db
reactomeMAPCOUNTS provides the "map count" (i.e. the count of mapped keys) for each map in package reactome.db.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: reactomeMAPCOUNTS
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reactomePATHID2EXTID
(Package: reactome.db) :
An annotation data object that maps Reactome pathway identifiers to Entrez Gene identifiers.
reactomePATHID2EXTID maps Reactome pathway identifiers to Entrez Gene identifiers
● Data Source:
BioConductor
● Keywords: datasets
● Alias: reactomePATHID2EXTID
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reactomePATHID2NAME
(Package: reactome.db) :
An annotation data object that maps Reactome pathway identifiers to
reactomePATHID2NAME maps Reactome pathway identifiers to pathway names used by Reactome for various pathways
● Data Source:
BioConductor
● Keywords: datasets
● Alias: reactomePATHID2NAME
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reactomePATHNAME2ID
(Package: reactome.db) :
An annotation data object that maps Reactome pathway names to
reactomePATHNAME2ID maps Reactome pathway names to pathway identifiers used by Reactome for various pathways
● Data Source:
BioConductor
● Keywords: datasets
● Alias: reactomePATHNAME2ID
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reactomeREACTOMEID2GO
(Package: reactome.db) :
An annotation data object that maps Reactome database identifiers to
reactomeREACTOMEID2GO maps Reactome database identifiers to Gene Ontoloty (GO) identifiers
● Data Source:
BioConductor
● Keywords: datasets
● Alias: reactomeREACTOMEID2GO
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reactome_dbconn
(Package: reactome.db) :
Collect information about the package annotation DB
Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: reactome_dbInfo, reactome_dbconn, reactome_dbfile, reactome_dbschema
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