m20kcodUNIGENE
(Package: m20kcod.db) :
Map between Manufacturer Identifiers and UniGene cluster identifiers
m20kcodUNIGENE is an R object that provides mappings between manufacturer identifiers and UniGene identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: m20kcodUNIGENE
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m20kcodUNIPROT
(Package: m20kcod.db) :
Map Uniprot accession numbers with Entrez Gene identifiers
m20kcodUNIPROT is an R object that contains mappings between the manufacturer identifiers and Uniprot accession numbers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: m20kcodUNIPROT, m20kcodUNIPROT2PROBE
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m20kcod_dbconn
(Package: m20kcod.db) :
Collect information about the package annotation DB
Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: m20kcod_dbInfo, m20kcod_dbconn, m20kcod_dbfile, m20kcod_dbschema
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mAPKLData
(Package: mAPKLData) :
Gene expression data from Turashvili et al. in 2007
This dataset contains the gene expression and clinical data as published in Turashvili et al. 2007.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: mAPKLData
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jekoChr11Array250Knsp
(Package: mBPCR) :
Affymetrix GeneChip Mapping 250K NSP Array data of JEKO-1 cell line (chr. 11)
Affymetrix GeneChip Mapping 250K NSP Array data of JEKO-1 cell line.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: jekoChr11Array250Knsp
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rec10k
(Package: mBPCR) :
Affymetrix GeneChip Mapping 10K Array data of REC-1 cell line
Affymetrix GeneChip Mapping 10K Array data of REC-1 cell line taken from the reference below.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: rec10k
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oligodata
(Package: maCorrPlot) :
Example data for package maCorrSample
Example expression data to demonstrate the functionality of the package: two data sources A and B with 30 patients and 1000 genes each, for each of which we have RMA expression values, (logarithmized) MAS5 expression values, and MAS5 absent/present calls.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: datA.amp, datA.mas5, datA.rma, datB.amp, datB.mas5, datB.rma, oligodata
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NBdata
(Package: maSigPro) :
RNA-Seq dataset example
NBdata contains a subset of a bigger normalized negative binomial simulated dataset.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: NBdata
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NBdesign
(Package: maSigPro) :
Experimental design for RNA-Seq example
NBdesign contains a subset of a bigger normalized negative binomial simulated dataset.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: NBdesign
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data.abiotic
(Package: maSigPro) :
Gene expression data potato abiotic stress
data.abiotic contains gene expression of a time course microarray experiment where potato plants were submitted to 3 different abiotic stresses.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: data.abiotic
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