sim2introgress
(Package: AFLPsim) :
Converting hybridsim object to introgress
The function sim2introgress converts a hybridsim object into an introgress input file. It is a wrapper to the function prepare.data of the package introgress
● Data Source:
CranContrib
● Keywords: hybridization, simulation
● Alias: sim2introgress
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0 images
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A demosimhybrid object can be plotted using the function plot.demosimhybrid, which is also used as the dedicated plot method. This function plots the frequency of parentals and hybrid classes on each generation.
● Data Source:
CranContrib
● Keywords: hybridization, simulation
● Alias: plot.demosimhybrid
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2 images
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bayescan
(Package: AFLPsim) :
Identifying candidate loci under natural selection with external application
This function calls Bayescan program from within R to identifying candidate loci under natural selection from genetic data.
● Data Source:
CranContrib
● Keywords: genome scan, hybridization, outlier
● Alias: bayescan
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0 images
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A hybridsim object can be plotted using the function plot.hybridsim, which is also used as the dedicated plot method. This function represents expected hybrid markers frequencies on a neutral sheet.
● Data Source:
CranContrib
● Keywords: hybridization, simulation
● Alias: plot.hybridsim
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1 images
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hybridsim
(Package: AFLPsim) :
AFLP simulator with selection
This function simulates AFLP profiles (or other dominant markers) of parentals and several hybrid classes (F1 and backcrosses on both parentals). In addition, selection on several markers can be simulated for the hybrid progeny.
● Data Source:
CranContrib
● Keywords: hybridization, simulation
● Alias: hybridsim
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This package contains hybrid simulation functions for dominant genetic data. It also provides several genome scan methods.
● Data Source:
CranContrib
● Keywords: package
● Alias: AFLPsim-package
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sim2arlequin
(Package: AFLPsim) :
Converting hybridsim object to a Arlequin input file
The function sim2arlequin converts a hybridsim object into a Arlequin input file.
● Data Source:
CranContrib
● Keywords: hybridization, simulation
● Alias: sim2arlequin
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0 images
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sim2popgene
(Package: AFLPsim) :
Converting hybridsim object to a PopGene input file
The function sim2popgene converts a hybridsim object into a PopGene input file.
● Data Source:
CranContrib
● Keywords: hybridization, simulation
● Alias: sim2popgene
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0 images
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hybridize
(Package: AFLPsim) :
AFLP simulator with selection from parental data
This function simulates AFLP profiles (or other dominant markers) of several hybrid classes (F1 and backcrosses on both parentals) from two parental populations. In addition, selection on several markers can be simulated for the hybrid progeny.
● Data Source:
CranContrib
● Keywords: hybridization, simulation
● Alias: hybridize
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0 images
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sim2newhybrids
(Package: AFLPsim) :
Converting hybridsim object to a NewHybrids input file
The function sim2newhybrids converts a AFLPsim object into a NewHybrids input file.
● Data Source:
CranContrib
● Keywords: hybridization, simulation
● Alias: sim2newhybrids
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0 images
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