createUniquePertbs
(Package: COMBIA) :
Function to calculate possible unique perturbations of replicates.
Function to calculate possible unique perturbations of replicates.
● Data Source:
CranContrib
● Keywords:
● Alias: createUniquePertbs
●
0 images
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synergySignificant
(Package: COMBIA) :
Function "synergySignificant" calculates significant synergy/antagonism concentration combinations and saves synergy/antagonism values.
Function "synergySignificant" calculates significant synergy/antagonism concentration combinations and saves synergy/antagonism values.
● Data Source:
CranContrib
● Keywords:
● Alias: synergySignificant
●
0 images
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extractReplicateValues
(Package: COMBIA) :
On basis of input well ranges, the function extracts values of these ranges from data.
On basis of input well ranges, the function extracts values of these ranges from data.
● Data Source:
CranContrib
● Keywords:
● Alias: extractReplicateValues
●
0 images
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extractKey
(Package: COMBIA) :
Extracts the barcodes from a dataset, each experimental plate has a barcode in a dataset.
Extracts the barcodes from a dataset, each experimental plate has a barcode in a dataset. Barcodes are extracted from the header of the each plate data from position specified by keyposition argument.
● Data Source:
CranContrib
● Keywords:
● Alias: extractKey
●
0 images
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selectPlate
(Package: COMBIA) :
Select one readout from the twice read data and store selected values.
Select one readout from the twice read data and store selected values. In those cases where an experiment is read twice, only one readout from each pair is selected. The selection is based on presence of minimum number of "selection key" or read with highest mean is picked in case of tie.
● Data Source:
CranContrib
● Keywords:
● Alias: selectPlate
●
0 images
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applyLoewe
(Package: COMBIA) :
This function calculates Loewe synergy/antagonism and associated BIs.
This function calculates Loewe synergy/antagonism and associated BIs.
● Data Source:
CranContrib
● Keywords:
● Alias: applyLoewe
●
0 images
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synAntPlot
(Package: COMBIA) :
This function prints and saves 2D and 3D plots of synergy/antagonism.
This function prints and saves 2D and 3D plots of synergy/antagonism.
● Data Source:
CranContrib
● Keywords:
● Alias: synAntPlot
●
2 images
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readFile
(Package: COMBIA) :
Read raw experimental data from a file.
Read raw experimental data from a file. This function reads the data from specified (excel,log, txt etc) file and store it in a data frame.
● Data Source:
CranContrib
● Keywords:
● Alias: readFile
●
0 images
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readMacSynergyValues
(Package: COMBIA) :
Read data from macSynergyII format and clean for outliers.
Read data from macSynergyII format and clean for outliers.
● Data Source:
CranContrib
● Keywords:
● Alias: readMacSynergyValues
●
0 images
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readFMCAValues
(Package: COMBIA) :
Read data from Fluorometric microculture cytotoxic assay (FMCA) data format and clean for outliers.
Read data from Fluorometric microculture cytotoxic assay (FMCA) data format and clean for outliers.
● Data Source:
CranContrib
● Keywords:
● Alias: readFMCAValues
●
0 images
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