updateIndiv
(Package: InSilicoVA) :
Update individual COD probabilities from InSilicoVA Model Fits
This function updates individual probabilities for each death and provide posterior credible intervals for each estimates.
● Data Source:
CranContrib
● Keywords:
● Alias: updateIndiv
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Computes individual cause of death and population cause-specific mortality fractions using the InSilicoVA algorithm. Provides a simple graphical representation of the result.
● Data Source:
CranContrib
● Keywords: InSilicoVA
● Alias: InsilicoVA, InsilicoVA-package
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extract.prob
(Package: InSilicoVA) :
Obtain conditional probabilities from training data
This is the function internally used in insilico.train function.
● Data Source:
CranContrib
● Keywords:
● Alias: extract.prob
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This function is the summary method for class insilico.
● Data Source:
CranContrib
● Keywords:
● Alias: print.insilico_summary, summary.insilico
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insilico
(Package: InSilicoVA) :
Implement InSilicoVA methods
This function implements InSilicoVA model. The InSilicoVA model is fitted with MCMC implemented in Java. For more detail, see the paper on http://arxiv.org/abs/1411.3042.
● Data Source:
CranContrib
● Keywords: InSilicoVA
● Alias: insilico, print.insilico
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get.indiv
(Package: InSilicoVA) :
Get individual COD probabilities from InSilicoVA Model Fits
This function calculates individual probabilities for each death and provide posterior credible intervals for each estimates. The default set up is to calculate the 95
● Data Source:
CranContrib
● Keywords:
● Alias: get.indiv
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This function implements physician debias algorithm proposed in Salter-Townshend and Murphy (2013).
● Data Source:
CranContrib
● Keywords:
● Alias: physician_debias
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insilico.fit
(Package: InSilicoVA) :
Implement InSilicoVA methods with more flexible customization
This function implements InSilicoVA model. This is the lower level core function of InSilicoVA with more flexibility in customized input. For more detail of model specification, see the paper on http://arxiv.org/abs/1411.3042 and the default function insilico.
● Data Source:
CranContrib
● Keywords: InSilicoVA
● Alias: insilico.fit
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plot.insilico
(Package: InSilicoVA) :
plot CSMF from a "insilico" object
Produce a bar plot of the CSMFs for a fitted "insilico" object.
● Data Source:
CranContrib
● Keywords: InSilicoVA
● Alias: plot.insilico
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0 images
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stackplot
(Package: InSilicoVA) :
plot grouped CSMF from a "insilico" object
Produce bar plot of the CSMFs for a fitted "insilico" object in broader groups.
● Data Source:
CranContrib
● Keywords: InSilicoVA
● Alias: stackplot
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providing 
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