Fisher1sided
(Package: LDtests) :
1-sided Fisher's test of linkage disequilibrium
1-sided Fisher's test of linkage disequilibrium
● Data Source:
CranContrib
● Keywords: htest
● Alias: Fisher1sided
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HWE2sided
(Package: LDtests) :
P-values for three different tests of HWE
Calculates conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions, the Haldane 2-sided test as implemented by Wiggington et al (2005) and the 1-sided test for inbreeding.
● Data Source:
CranContrib
● Keywords: htest
● Alias: HWE2sided
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HWE2sided.table
(Package: LDtests) :
Table and plot of Hardy-Weinberg p-values for all 2x2 tables possible under the null distribution.
Table and plot of HWE p-values for all possible contingency tables consistent with the margins of the input observed contingency table. See HWE2sided for details of the p-values calculated.
● Data Source:
CranContrib
● Keywords: htest
● Alias: HWE2sided.table
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1 images
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LD2sided.pvals
(Package: LDtests) :
P-values and Linkage Disequilibrium measures for several tests of Linkage Disequilibrium
Calculates 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008), 1-sided Fisher's exact test for LD and the conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions.
● Data Source:
CranContrib
● Keywords: htest
● Alias: LD2sided.pvals
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LD2sided.tables
(Package: LDtests) :
Tables of p-values and Linkage Disequilibrium measures for all 2x2 tables possible under the null distribution.
This function calculates p-values and Linkage Disequilibrium measures for all possible 2x2 contingency tables consistent with the margins of the input observed contingency table. See LD2sided.pvals for details of the Linkage Disequilibrium measures and tests used.
● Data Source:
CranContrib
● Keywords: htest
● Alias: LD2sided.tables
●
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Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium (HWE). - 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008) - 1-sided Fisher's exact test for LD - 2-sided Haldane test for HWE (Wiggington 2005) - 1-sided test for inbreeding - conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions (for both LD and HWE)
● Data Source:
CranContrib
● Keywords: htest
● Alias: LDtests, LDtests-package
●
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