Last data update: 2014.03.03
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R Release (3.2.3)
CranContrib
BioConductor
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BiocViews
SMO (statistical methods ontology)
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Images
LC-utils
(Package: LICORS ) :
Utilities for LC class
The "LC"
class is the core property of the LICORS model as it specifies the spatio-temporal neighborhood of the past and future light cone. The function setup_LC_geometry
generates an instance of the "LC"
class.
● Data Source:
CranContrib
● Keywords: hplot, method, models, print
● Alias: LC-utils, LC_coordinates2control_settings, plot.LC, summary.LC
●
2 images
estimate_state_adj_matrix
(Package: LICORS ) :
Estimate adjacency matrix for equivalent FLC distributions based on states
This function estimates the adjacency matrix mathbf{A} of all pairwise equivalent FLC distributions given the states s_1, …, s_K . See Details below.
● Data Source:
CranContrib
● Keywords: distribution, manip, multivariate, nonparametric
● Alias: estimate_state_adj_matrix
●
1 images
This function predicts FLCs given new PLCs based on the estimated ε mappings and estimated conditional distributions.
● Data Source:
CranContrib
● Keywords: methods
● Alias: predict_FLC_given_PLC
●
0 images
weight_matrix2states
(Package: LICORS ) :
Returns unique state assignment from a (row-wise) weight matrix
Converts a probabilistic cluster assignment to a unique cluster assignment using the
● Data Source:
CranContrib
● Keywords: array, manip
● Alias: weight_matrix2states
●
0 images
The "mixed_LICORS"
class is the objectput from the mixed_LICORS
estimator.
● Data Source:
CranContrib
● Keywords: hplot, model, nonparametric
● Alias: complete_LICORS_control, mixed_LICORS-utils, plot.mixed_LICORS, predict.mixed_LICORS, summary.mixed_LICORS
●
0 images
estimate_LC_pdfs
(Package: LICORS ) :
Estimate PLC/FLC distributions for all states
estimate_LC_pdfs
estimates the PLC and FLC distributions for each state k = 1, …, K . It iteratively applies estimate_LC.pdf.state
.
● Data Source:
CranContrib
● Keywords: distribution, multivariate, nonparametric
● Alias: estimate_LC.pdf.state, estimate_LC_pdf_state, estimate_LC_pdfs
●
2 images
search_knn
(Package: LICORS ) :
K nearest neighbor (KNN) search
This is a wrapper for several k nearest neighbors (KNNs) algorithms in R. Currently wrapped functions are from the FNN
, RANN
, and yaImpute
package.
● Data Source:
CranContrib
● Keywords: classif, cluster, nonparametric
● Alias: search_knn
●
1 images
threshold
(Package: LICORS ) :
Threshold a matrix/vector below and above
threshold
sets values of a vector/matrix below min
to min
; values above max
are set to max
.
● Data Source:
CranContrib
● Keywords: array, manip
● Alias: threshold
●
0 images
image2
(Package: LICORS ) :
Improved image() function
Improved version of the image
function in the graphics
package. In particular, it displays matrices the way they are shown in the R console, not transposed/rearranged/... For example, a covariance matrix has the diagonal in from top-left to bottom-right as it should be, and not from bottom-left to top-right.
● Data Source:
CranContrib
● Keywords: aplot, color, hplot
● Alias: image2, make_legend
●
4 images
This function removes small sample states by reassigning points in those state to nearby states.
● Data Source:
CranContrib
● Keywords: manip, method
● Alias: remove_small_sample_states
●
0 images