anovaint
(Package: OLIN) :
One-factorial ANOVA assessing intensity-dependent bias
This function performs an one-factorial analysis of variance assessing intensity-dependent bias for a single array. The predictor variable is the average logged intensity of both channels and the response variable is the logged fold-change.
● Data Source:
BioConductor
● Keywords: models, regression
● Alias: anovaint
●
0 images
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anovapin
(Package: OLIN) :
One-factorial ANOVA assessing pin-dependent bias.
This function performs an one-factorial analysis of variance assessing pin-dependent bias for a single array
● Data Source:
BioConductor
● Keywords: models, regression
● Alias: anovapin
●
0 images
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anovaplate
(Package: OLIN) :
One-factorial ANOVA assessing pin-dependent bias.
This function performs an one-factorial analysis of variance assessing microtiter plate-dependent bias for a single array
● Data Source:
BioConductor
● Keywords: models, regression
● Alias: anovaplate
●
0 images
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anovaspatial
(Package: OLIN) :
One-factorial ANOVA assessing spatial bias
This function performs an one-factorial analysis of variance to test for spatial bias for a single array. The predictor variable is the average logged intensity of both channels and the response variable is the logged fold-change.
● Data Source:
BioConductor
● Keywords: models, regression
● Alias: anovaspatial
●
2 images
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Background correction based on backgroundCorrect of the limma package.
● Data Source:
BioConductor
● Keywords: utilities
● Alias: backgroundCorrect2
●
1 images
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bas
(Package: OLIN) :
Between-array scaling
This function performs an between-array scaling
● Data Source:
BioConductor
● Keywords: utilities
● Alias: bas
●
2 images
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colorbar.mxy
(Package: OLIN) :
Generates a colour bar
Generates colour bar for MXY plots
● Data Source:
BioConductor
● Keywords: hplot
● Alias: colorbar.mxy
●
1 images
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Generates colour bar for 2D plots of absolute values
● Data Source:
BioConductor
● Keywords: hplot
● Alias: colorbar.mxy.abs
●
0 images
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colorbar.sig
(Package: OLIN) :
Generates a colour bar for spatial significance plots
This function generates a colour bar for the visualisation of significance of spatial bias.
● Data Source:
BioConductor
● Keywords: hplot
● Alias: colorbar.sig
●
0 images
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(Package: OLIN) :
Assessment of the significance of intensity-dependent bias
This function assesses the significance of intensity-dependent bias by an one-sided random permutation test. The observed average values of logged fold-changes within an intensity neighbourhood are compared to an empirical distribution generated by random permutation. The significance is given by the false discovery rate.
● Data Source:
BioConductor
● Keywords: htest, nonparametric, univar
● Alias: fdr.int
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0 images
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