Last data update: 2014.03.03

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Results 1 - 4 of 4 found.
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Polyfit-package (Package: Polyfit) :

implementation the Polyfit add-on to DESeq described in the paper "Improved error estimates for the analysis of differential expression from RNA-seq data"
● Data Source: BioConductor
● Keywords: package
● Alias: Polyfit, Polyfit-package
● 0 images

levelPValues (Package: Polyfit) : Level P-values

Function to level out a P-value spectrum generated by the Polyfit extension of DESeq by fitting a quadratic function to the right hand portion of the spectrum, produce 'corrected' p-values and q-values using an adapted version of the Storey-Tibsharini procedure
● Data Source: BioConductor
● Keywords:
● Alias: levelPValues
1 images

pfNbinomTest (Package: Polyfit) :

Polyfit extensions to the DESeq functions nbinomTest and nbinomTestForMatrices which test for differences between the base means of two conditions (i.e., for differential expression in the case of RNA-Seq).
● Data Source: BioConductor
● Keywords:
● Alias: pfNbinomTest, pfNbinomTestForMatrices
1 images

twoSidedPValueFromDiscrete (Package: Polyfit) :

Function to calculate a 2-sided p-value of an observation xobs for a finite discrete distribution
● Data Source: BioConductor
● Keywords: ~kwd1, ~kwd2
● Alias: twoSidedPValueFromDiscrete
1 images