R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Results 1 - 9 of 9 found.
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CnvGSAInput-class (Package: cnvGSA) : Class code{"CnvGSAInput"

Container class for the input structures required by the main function (i.e. cnvGSALogRegTest()).

● Data Source: BioConductor
● Keywords: classes
● Alias: CnvGSAInput, CnvGSAInput-class, cnvData.ls, cnvData.ls,CnvGSAInput-method, cnvData.ls<-, cnvData.ls<-,CnvGSAInput-method, config.ls, config.ls,CnvGSAInput-method, config.ls<-, config.ls<-,CnvGSAInput-method, geneID.ls, geneID.ls,CnvGSAInput-method, geneID.ls<-, geneID.ls<-,CnvGSAInput-method, gsData.ls, gsData.ls,CnvGSAInput-method, gsData.ls<-, gsData.ls<-,CnvGSAInput-method, params.ls, params.ls,CnvGSAInput-method, params.ls<-, params.ls<-,CnvGSAInput-method, phData.ls, phData.ls,CnvGSAInput-method, phData.ls<-, phData.ls<-,CnvGSAInput-method
● 0 images

CnvGSAOutput-class (Package: cnvGSA) : Class code{"CnvGSAOutput"

Container class for the output structures produced by the main function (i.e. cnvGSAlogRegTest()).

● Data Source: BioConductor
● Keywords: classes
● Alias: CnvGSAOutput, CnvGSAOutput-class
● 0 images

cnvGSA-package (Package: cnvGSA) : Gene-set Analysis of (Rare) Copy Number Variants

cnvGSA is an R package for testing the rare gene-set variant burden in case-control studies of copy number variation (CNV).

● Data Source: BioConductor
● Keywords:
● Alias: cnvGSA, cnvGSA-package
● 0 images

cnvGSAIn (Package: cnvGSA) : Creating the input S4 object needed to run the script.

Creating the input S4 object needed to run the script.

● Data Source: BioConductor
● Keywords:
● Alias: cnvGSAIn
● 0 images

cnvGSAgsTables (Package: cnvGSA) : Creates the gene-set tables for each gene-set.

Creates the gene-set tables for each gene-set.

● Data Source: BioConductor
● Keywords:
● Alias: cnvGSAgsTables
● 0 images

cnvGSAlogRegTest (Package: cnvGSA) : Performing the logistic regression tests on the CNV data.

This test uses 4 different correction models and requires a case control study. It looks at odds ratios and calculates statistics for the gene-set collection.

● Data Source: BioConductor
● Keywords:
● Alias: cnvGSAlogRegTest
● 0 images

f.enrFiles (Package: cnvGSA) : Prepares the files for the enrichment maps.

Prepares the files for the enrichment maps.

● Data Source: BioConductor
● Keywords:
● Alias: f.enrFiles
● 0 images

f.makeViz (Package: cnvGSA) : Creates the plots from the CnvGSAOutput data.

Creates the plots from the CnvGSAOutput data.

● Data Source: BioConductor
● Keywords:
● Alias: f.makeViz
● 0 images

f.readConfig (Package: cnvGSA) : Reading in the config file.

This function is used to read in all the values from the config file and change them in the S4 objects used throughout the scripts. If you would like to reload the config values, you will want to run this function.

● Data Source: BioConductor
● Keywords:
● Alias: f.readConfig
● 0 images