Last data update: 2014.03.03

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Results 1 - 10 of 61 found.
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DFS (Package: graph) : Depth First Search

This function implements algorithm 4.2.1 of Gross and Yellen. The input is a graph and a node to start from. It returns a standard vertex labeling of graph. This is a vector with elements corresponding to the nodes of graph and with values that correspond to point in the depth first search the node is visited.
● Data Source: BioConductor
● Keywords: manip
● Alias: DFS, DFS,graph,character-method
● 0 images

MAPKsig (Package: graph) : A graph encoding parts of the MAPK signaling pathway

A graph encoding parts of the MAPK signaling pathway
● Data Source: BioConductor
● Keywords: models
● Alias: MAPKsig
1 images

MultiGraph-class (Package: graph) : EXPERIMENTAL class "MultiGraph"

The MultiGraph class represents a single node set and a set of edge sets. Each edge set is either directed or undirected. We can think of an edge in a MultiGraph as a 4-tuple (from-node, to-node, edge-type, weight), where the edge-type field in the tuple identifies the edge set, the weight is a numeric value, and the order of the nodes only matters in the case of a directed edge set. Unlike some of the graph representations, self-loops are allowed (from-node == to-node).
● Data Source: BioConductor
● Keywords: classes
● Alias: MultiGraph, MultiGraph-class, edgeSetIntersect0, edgeSetUnion0, eweights, extractFromTo, extractFromTo,MultiGraph-method, extractGraphAM, extractGraphBAM, isDirected,MultiGraph-method, nodes,MultiGraph-method, numEdges,MGEdgeSet-method, numEdges,MultiGraph-method, numNodes,MultiGraph-method, show,MultiGraph-method, subsetEdgeSets, ugraph,MultiGraph-method
● 0 images

acc-methods (Package: graph) : Methods for Accessibility Lists

This generic function takes an object that inherits from the graph class and a node in that graph and returns a vector containing information about all other nodes that are accessible from the given node. The methods are vectorized so that index can be a vector.
● Data Source: BioConductor
● Keywords: methods
● Alias: acc, acc,clusterGraph,character-method, acc,clusterGraph-method, acc,graph,character-method, acc,graph-method, acc-methods
● 0 images

addEdge (Package: graph) : addEdge

A function to add an edge to a graph.
● Data Source: BioConductor
● Keywords: manip
● Alias: addEdge
● 0 images

addNode (Package: graph) : addNode

Add one or more nodes to a graph.
● Data Source: BioConductor
● Keywords: manip
● Alias: addNode, addNode,character,distGraph,list-method, addNode,character,graphBAM,missing-method, addNode,character,graphNEL,list-method, addNode,character,graphNEL,missing-method
● 0 images

adj-methods (Package: graph) : Methods for finding the adjacency list for selected nodes.

This generic function takes an object that inherits from the graph class and a node in that graph and returns a vector containing information about all other nodes that are adjacent to the given node. This means that they are joined to the given node by an edge. The accessibility list, acc is the list of all nodes that can be reached from a specified node.
● Data Source: BioConductor
● Keywords: methods
● Alias: adj
● 0 images

adjacencyMatrix (Package: graph) : Compute an Adjacency Matrix for a graphBAM object

Though unwieldy for large matrices, a full adjacency matrix can be useful for debugging and export.
● Data Source: BioConductor
● Keywords: manip
● Alias: adjacencyMatrix, adjacencyMatrix,graphBAM-method
● 0 images

attrData-class (Package: graph) : Class "attrData"

A container class to manage generic attributes. Supports named attributes with default values with methods for vectorized access.
● Data Source: BioConductor
● Keywords: classes
● Alias: attrData-class, attrDataItem,attrData,character,character-method, attrDataItem,attrData,character,missing-method, attrDataItem<-,attrData,character,character-method, attrDefaults,attrData,character-method, attrDefaults,attrData,missing-method, attrDefaults<-,attrData,character,ANY-method, attrDefaults<-,attrData,missing,list-method, initialize,attrData-method, names,attrData-method, names<-,attrData,character-method, removeAttrDataItem<-, removeAttrDataItem<-,attrData,character,NULL-method
● 0 images

attrDataItem-methods (Package: graph) : Get and set attributes values for items in an attrData object

The attrDataItem method provides get/set access to items stored in a attrData-class object.
● Data Source: BioConductor
● Keywords: methods
● Alias: attrDataItem, attrDataItem-methods, attrDataItem<-, attrDataItem<--methods
● 0 images