A GRange object CEU contains 5% of all SNPs from CEU by controling genome-wide density is the same as all SNPs from CEU
● Data Source:
BioConductor
● Keywords:
● Alias: CEU
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A GRange object Tcell contains three columns: chromosome, genomic start position and genomic end position.
● Data Source:
BioConductor
● Keywords:
● Alias: Tcell
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These are a group of functions to generate plot to visualize the trait-associated SNPs.
● Data Source:
BioConductor
● Keywords:
● Alias: plotContext, plotGene, plotInterval, plotPvalue, plotSNP
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Print the outcome of taSNP enrichment analyses. Print the overall taSNP enrichment, trait-specific taSNP enrichment,trait-class-specific taSNP enrichment.
● Data Source:
BioConductor
● Keywords:
● Alias: print.traseR
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These are a group of functions to retrieve the trait-associated SNPs based on input
● Data Source:
BioConductor
● Keywords:
● Alias: queryGene, queryKeyword, querySNP
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A GRange object taSNP contains trait-associated SNPs from dbGaP and NHGRI downloaded from Association Results Browser.
● Data Source:
BioConductor
● Keywords:
● Alias: taSNP
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A GRange object taSNPLD contains linkage disequilibrium (>0.8) SNPs of all trait-associated SNPs from dbGaP and NHGRI.
● Data Source:
BioConductor
● Keywords:
● Alias: taSNPLD
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Perform GWAS trait-associated SNP enrichment analyses in genomic intervals. Explore and visualize the results.
● Data Source:
BioConductor
● Keywords: package
● Alias: traseR-package
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Perform GWAS trait-associated SNP enrichment analyses in genomic intervals using different approaches
● Data Source:
BioConductor
● Keywords:
● Alias: traseR
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