EGSEA

Package: EGSEA
Title: Ensemble of Gene Set Enrichment Analyses
Version: 1.0.3
Date: 10-05-2016
Author: Monther Alhamdoosh, Milica Ng and Matthew Ritchie
Maintainer: Monther Alhamdoosh <m.hamdoosh@gmail.com>
Description: This package implements the Ensemble of Gene Set Enrichment
Analyses (EGSEA) method for gene set testing.
biocViews: DifferentialExpression, GO, GeneExpression,
GeneSetEnrichment, Genetics, Microarray, MultipleComparison,
OneChannel, Pathways, RNASeq, Sequencing, Software,
SystemsBiology, TwoChannel,Metabolomics, Proteomics, KEGG,
GraphAndNetwork
Depends: R (>= 3.3), Biobase, gage (>= 2.14.4), AnnotationDbi, topGO
(>= 2.16.0), pathview (>= 1.4.2)
Imports: PADOG (>= 1.6.0), GSVA (>= 1.12.0), globaltest (>= 5.18.0),
limma (>= 3.20.9), edgeR (>= 3.6.8), HTMLUtils (>= 0.1.5),
hwriter (>= 1.2.2), gplots (>= 2.14.2), ggplot2 (>= 1.0.0),
safe (>= 3.4.0), stringi (>= 0.5.0), parallel, stats,
grDevices, graphics, utils, org.Hs.eg.db, org.Mm.eg.db,
org.Rn.eg.db, EGSEAdata
License: GPL-2
LazyLoad: yes
NeedsCompilation: no
Suggests: BiocStyle, knitr, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
Packaged: 2016-05-16 06:17:00 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'EGSEA' ...
** R
** inst
** preparing package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
  converting help for package 'EGSEA'
    finding HTML links ... done
    EGSEA-package                           html  
    buildCustomIdxEZID                      html  
    buildGeneSetDBIdxEZID                   html  
    buildIdxEZID                            html  
    buildKEGGIdxEZID                        html  
    buildMSigDBIdxEZID                      html  
    egsea                                   html  
    egsea.base                              html  
    egsea.cnt                               html  
Rd warning: /tmp/RtmpOmPlSD/R.INSTALL3606284dd67a/EGSEA/man/egsea.cnt.Rd:35: missing file link 'eBayes'
    egsea.combine                           html  
    egsea.ora                               html  
    egsea.sort                              html  
    topSets                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* DONE (EGSEA)
Making 'packages.html' ... done