Package: corHMM
Version: 1.19
Date: 2016-6-6
Title: Analysis of Binary Character Evolution
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Jeffrey C. Oliver <jeffreycoliver@gmail.com>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Depends: ape, nloptr, GenSA
Imports: expm, numDeriv, corpcor, phangorn, parallel
Description: Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-06-08 16:09:30 UTC; jeremybeaulieu
Repository: CRAN
Date/Publication: 2016-06-09 06:18:08
Package: hisse
Version: 1.7
Date: 2016-6-8
Title: Hidden State Speciation and Extinction
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Depends: ape, deSolve, GenSA, subplex, nloptr
Suggests: testthat, diversitree, knitr
Imports: parallel, phytools, data.table, methods
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
License: GPL (>= 2)
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-06-13 17:27:00 UTC; jbeaulieu
Repository: CRAN
Date/Publication: 2016-06-14 08:29:49
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