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Last data update: 2014.03.03
Data Source
R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 4 of 4 found.
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Package: Homo.sapiens
Title: Annotation package for the Homo.sapiens object
Description: Contains the Homo.sapiens object to access data from several related annotation packages.
Version: 1.3.1
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi
(>= 1.11.39), GenomicFeatures, GO.db, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
organism: Homo sapiens
species: Homo sapiens
biocViews: AnnotationData, Genetics, OrganismDb, Homo_sapiens
NeedsCompilation: no
Packaged: 2015-06-18 22:45:16 UTC; mcarlson
● Data Source:
BioConductor
● BiocViews: AnnotationData, Genetics, Homo_sapiens, OrganismDb
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0 images,
0 functions,
1 datasets
●
Reverse Depends: 6
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Package: FDb.InfiniumMethylation.hg19
Title: Annotation package for Illumina Infinium DNA methylation probes
Description: Compiled HumanMethylation27 and HumanMethylation450 annotations
Version: 2.2.0
Author: Tim Triche, Jr.
Maintainer: Tim Triche, Jr. <tim.triche@gmail.com>
Depends: R (>= 2.10), GenomicFeatures (>= 1.7.22),
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
Imports: GenomicFeatures, AnnotationDbi, Biostrings
Suggests: FDb.UCSC.snp135common.hg19
License: Artistic-2.0
organism: Homo sapiens
species: Homo sapiens
provider: NCBI/GEO/Illumina
resource_url: http://www.ncbi.nlm.nih.gov/geo/
biocViews: AnnotationData, DNAMethylation, Homo_sapiens
Collate: getMethylationChipName.R getPlatform.R get450k.R get27k.R
getNearest.R lift27kToHg19.R zzz.R
Packaged: 2014-12-14 04:04:26 UTC; tim
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Package: FunciSNP
Type: Package
Title: Integrating Functional Non-coding Datasets with Genetic
Association Studies to Identify Candidate Regulatory SNPs
Version: 1.14.0
Date: 2013-01-19
Author: Simon G. Coetzee <simon@simoncoetzee.com> and Houtan Noushmehr, PhD <houtan@usp.br>
Maintainer: Simon G. Coetzee <simon@simoncoetzee.com>
biocViews: Infrastructure, DataRepresentation, DataImport,
SequenceMatching, Annotation
Depends: R (>= 2.14.0), ggplot2, TxDb.Hsapiens.UCSC.hg19.knownGene,
FunciSNP.data
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges,
GenomicRanges, Rsamtools (>= 1.6.1), rtracklayer (>= 1.14.1),
ChIPpeakAnno (>= 2.2.0), VariantAnnotation, plyr, snpStats,
ggplot2 (>= 0.9.0), reshape (>= 0.8.4), scales
Suggests: org.Hs.eg.db
Enhances: parallel
Description: FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.
License: GPL-3
URL: http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
LazyData: yes
NeedsCompilation: no
Packaged: 2016-05-04 04:35:13 UTC; biocbuild
● Data Source:
BioConductor
● BiocViews: Annotation, DataImport, DataRepresentation, Infrastructure, SequenceMatching
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3 images,
11 functions,
0 datasets
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Reverse Depends: 0
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Package: chimera
Type: Package
Title: A package for secondary analysis of fusion products
Version: 1.14.0
Date: 31 March 2015
Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero
Maintainer: Raffaele A Calogero <raffaele.calogero@unito.it>
Depends: Biobase, GenomicRanges (>= 1.13.3), Rsamtools (>= 1.13.1),
GenomicAlignments, methods, AnnotationDbi,
BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene,
Homo.sapiens
Suggests: BiocParallel, geneplotter
Enhances: Rsubread, BSgenome.Mmusculus.UCSC.mm9,
TxDb.Mmusculus.UCSC.mm9.knownGene,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus,
BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene
Description: This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.
biocViews: Infrastructure
SystemRequirements: STAR, TopHat, bowtie and samtools are required for
some functionalities
License: Artistic-2.0
NeedsCompilation: yes
Packaged: 2016-05-04 04:52:34 UTC; biocbuild
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