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Last data update: 2014.03.03
Data Source
R Release (3.2.3)
CranContrib
BioConductor
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Package: mmod
Version: 1.3.1
Date: 2015-07-09
Title: Modern Measures of Population Differentiation
Authors@R: c(
person("David", "Winter", email = "david.winter@gmail.com", role = c("aut", "cre")),
person("Peter", "Green", email = "pitakakariki@gmail.com", role = "ctb"),
person("Zhian", "Kamvar", email = "kamvarz@science.oregonstate.edu", role = "ctb"),
person("Thierry", "Gosselin", email = "thierrygosselin@icloud.com", role = "ctb")
)
Maintainer: David Winter <david.winter@gmail.com>
Depends: R (>= 2.6.0), adegenet (>= 2.0),
Imports: stats, pegas
ZipData: no
Description: Provides functions for measuring
population divergence from genotypic data.
License: MIT + file LICENSE
URL: https://github.com/dwinter/mmod
NeedsCompilation: no
Packaged: 2015-08-27 00:33:57 UTC; david
Author: David Winter [aut, cre],
Peter Green [ctb],
Zhian Kamvar [ctb],
Thierry Gosselin [ctb]
Repository: CRAN
Date/Publication: 2015-08-27 08:29:24
● Data Source:
CranContrib
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0 images,
17 functions,
0 datasets
●
Reverse Depends: 0
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Package: PopGenReport
Type: Package
Title: A Simple Framework to Analyse Population Genetic Data
Version: 2.2.2
Date: 2016-05-9
Authors@R: c(
person("Bernd", "Gruber", email="bernd.gruber@canberra.edu.au", role=c("aut","cre")),
person("Aaron", "Adamack", email="aaron.adamack@canberra.edu.au", role="aut"))
Description: Provides beginner friendly framework to analyse population genetic
data. It uses 'knitr' to create comprehensive reports on spatial genetic data.
For detailed information how to use the package refer to the comprehensive
tutorials or visit www.popgenreport.org.
License: GPL
LazyData: true
Depends: R (>= 3.0.0), knitr, adegenet (>= 2.0.0), raster
Imports: lattice, RgoogleMaps, gap, calibrate, xtable, plyr, dismo,
reshape, ggplot2, R.utils, ade4, pegas, genetics, rgdal,
gdistance, vegan, sp, mmod, GGally, data.table, graphics,
grDevices, methods, stats, utils
VignetteBuilder: knitr
URL: https://github.com/green-striped-gecko/PopGenReport
Suggests:
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-11 01:37:12 UTC; s425824
Author: Bernd Gruber [aut, cre],
Aaron Adamack [aut]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Repository: CRAN
Date/Publication: 2016-05-11 12:06:20
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Package: strataG
Title: Summaries and Population Structure Analyses of Genetic Data
Description: A toolkit for analyzing stratified population genetic data.
Version: 1.0.5
License: GNU General Public License
Authors@R: c(
EA = person("Eric", "Archer", email = "eric.archer@noaa.gov", role = c("aut", "cre")),
PA = person("Paula", "Adams", email = "peadams@crimson.ua.edu", role = c("aut")),
BS = person("Brita", "Schneiders", email = "britaschneiders@u.northwestern.edu", role = c("aut")))
BugReports: https://github.com/EricArcher/strataG/issues
Depends: R (>= 3.2.0), apex, adegenet
Suggests: knitr, rmarkdown
Imports: ape, copula, ggplot2, graphics, Hmisc, methods, pegas,
phangorn, RColorBrewer, Rcpp, reshape2, stats, swfscMisc, utils
Collate: strataG-package.R gtypes.class.R gtypes.accessors.R
is.gtypes.R initialize.gtypes.R strataG-internal.R
as.matrix.gtypes.R as.data.frame.gtypes.R alleleFreqFormat.R
alleleFreqs.R alleleSplit.R allelicRichness.R as.multidna.R
baseFreqs.R clumpp.R createConsensus.R dupGenotypes.R evanno.R
expectedNumAlleles.R fasta.R fastsimcoal.input.R fastsimcoal.R
fixedDifferences.R fixedSites.R freq2GenData.R fstToNm.R
fusFs.R gelato.R genepop.R haplotypeLikelihoods.R
heterozygosity.R Hstats.R hweTest.R idRows.R iupacCode.R
jackHWE.R labelHaplotypes.R LDgenepop.R lowFreqSubs.R mRatio.R
mafft.R mega.R mostDistantSequences.R
mostRepresentativeSequences.R neiDa.R nucleotideDivergence.R
nucleotideDiversity.R numAlleles.R numGensEq.R numMissing.R
permuteStrata.R phase.R popStructStat.R popStructTest.R
privateAlleles.R propUniqueAlleles.R qaqc.R RcppExports.R
readGenData.R removeSequences.R sharedLoci.R show.gtypes.R
simGammaHaps.R statChi2.R statFis.R statFst.R statGst.R
statJostD.R statPhist.R strataSplit.R stratify.R structure.R
structurePlot.R summarizeLoci.R summarizeSeqs.R
summary.gtypes.R tajimasD.R theta.R TiTvRatio.R trimNs.R
validIupacCodes.R variableSites.R wrightFst.R write.arlequin.R
write.gtypes.R write.nexus.snapp.R gtypes2genind.R
gtypes2loci.R df2gtypes.R sequence2gtypes.R gtypes2phyDat.R
LazyData: true
VignetteBuilder: knitr
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-30 22:38:19 UTC; eric.archer
Author: Eric Archer [aut, cre],
Paula Adams [aut],
Brita Schneiders [aut]
Maintainer: Eric Archer <eric.archer@noaa.gov>
Repository: CRAN
Date/Publication: 2016-05-31 07:51:52
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Package: poppr
Type: Package
Title: Genetic Analysis of Populations with Mixed Reproduction
Version: 2.2.0
Date: 2016-06-08
Authors@R: c(person(c("Zhian", "N."), "Kamvar", role = c("cre", "aut"),
email = "kamvarz@science.oregonstate.edu"),
person(c("Javier", "F."), "Tabima", role = "aut",
email = "tabimaj@onid.orst.edu"),
person(c("Sydney", "E."), "Everhart", role = c("ctb", "dtc"),
email = "everhart@unl.edu"),
person(c("Jonah", "C."), "Brooks", role = "aut",
email = "brookjon@onid.orst.edu"),
person(c("Stacy", "A."), "Krueger-Hadfield", role = "ctb",
email = "kruegersa@cofc.edu"),
person(c("Erik"), "Sotka", role = "ctb",
email = "sotkae@cofc.edu"),
person(c("Brian", "J."), "Knaus", role = "ctb",
email = "briank.lists@gmail.com"),
person(c("Niklaus", "J."), "Grunwald", role = "ths",
email = "grunwaln@science.oregonstate.edu"))
Maintainer: Zhian N. Kamvar <kamvarz@science.oregonstate.edu>
Encoding: UTF-8
URL: http://github.com/grunwaldlab/poppr
http://grunwaldlab.github.io/Population_Genetics_in_R/,
http://grunwaldlab.cgrb.oregonstate.edu/poppr-r-package-population-genetics
Description: Population genetic analyses for hierarchical analysis of partially
clonal populations built upon the architecture of the 'adegenet' package.
MailingList: http://groups.google.com/group/poppr
BugReports: https://github.com/grunwaldlab/poppr/issues
Depends: R (>= 2.15.1), adegenet (>= 2.0.0)
Imports: stats, graphics, grDevices, utils, vegan, ggplot2, phangorn,
ape (>= 3.1-1), igraph, methods, ade4, pegas, reshape2, dplyr
(>= 0.4), boot, shiny, magrittr
Suggests: testthat, knitr, rmarkdown, knitcitations, polysat, poweRlaw,
cowplot
License: GPL-2 | GPL-3
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-06-08 23:19:50 UTC; zhian
Author: Zhian N. Kamvar [cre, aut],
Javier F. Tabima [aut],
Sydney E. Everhart [ctb, dtc],
Jonah C. Brooks [aut],
Stacy A. Krueger-Hadfield [ctb],
Erik Sotka [ctb],
Brian J. Knaus [ctb],
Niklaus J. Grunwald [ths]
Repository: CRAN
Date/Publication: 2016-06-13 17:17:59
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Package: pegas
Version: 0.9
Date: 2016-04-14
Title: Population and Evolutionary Genetics Analysis System
Authors@R: c(person("Emmanuel", "Paradis", role = c("aut", "cre", "cph"), email = "Emmanuel.Paradis@ird.fr"),
person("Thibaut", "Jombart", role = c("aut", "cph")),
person("Klaus", "Schliep", role = c("aut", "cph")),
person("Alastair", "Potts", role = c("aut", "cph")),
person("David", "Winter", role = c("aut", "cph")))
Depends: R (>= 2.6.0), ape (>= 2.4), adegenet
Imports: graphics, utils
ZipData: no
Description: Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, and for the analysis of population nucleotide sequences and micro-satellites including coalescence analyses.
License: GPL (>= 2)
URL: http://ape-package.ird.fr/pegas.html
NeedsCompilation: yes
Packaged: 2016-04-14 09:48:45 UTC; paradis
Author: Emmanuel Paradis [aut, cre, cph],
Thibaut Jombart [aut, cph],
Klaus Schliep [aut, cph],
Alastair Potts [aut, cph],
David Winter [aut, cph]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Repository: CRAN
Date/Publication: 2016-04-16 00:03:13
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providing 
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