R Graphical Manual

Last data update: 2014.03.03

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intansv : Integrative analysis of structural variations

Package: intansv
Title: Integrative analysis of structural variations
Description: This package provides efficient tools to read and integrate
structural variations predicted by popular softwares. Annotation and
visulation of structural variations are also implemented in the
package.
Version: 1.10.0
Author: Wen Yao <ywhzau@gmail.com>
Maintainer: Wen Yao <ywhzau@gmail.com>
biocViews: Genetics, Annotation, Sequencing, Software
Depends: R (>= 2.14.0), plyr, ggbio, GenomicRanges
Imports: BiocGenerics, IRanges
License: Artistic-2.0
NeedsCompilation: no
Packaged: 2016-05-04 05:02:23 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Annotation, Genetics, Sequencing, Software
● 2 images, 12 functions, 0 datasets
● Reverse Depends: 0

CAFE : Chromosmal Aberrations Finder in Expression data

Package: CAFE
Type: Package
Title: Chromosmal Aberrations Finder in Expression data
Version: 1.8.0
Date: 2014-03-16
Author: Sander Bollen
Maintainer: Sander Bollen <sander.h.bollen@gmail.com>
Depends: R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports: affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
Suggests: RUnit, BiocGenerics, BiocStyle
Description: Detection and visualizations of gross chromosomal
aberrations using Affymetrix expression microarrays as input
License: GPL-3
ByteCompile: true
biocViews: GeneExpression, Microarray, OneChannel, GeneSetEnrichment
Collate: microProcess-improve.R selectSamples.R chromosomeStats.R
rawPlot.R slidPlot.R discontPlot.R facetPlot.R
NeedsCompilation: no
Packaged: 2016-05-04 05:21:43 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: GeneExpression, GeneSetEnrichment, Microarray, OneChannel
● 0 images, 14 functions, 1 datasets
● Reverse Depends: 0