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Package: RTCGA
Title: The Cancer Genome Atlas Data Integration
Version: 1.2.2
Date: 2016-03-30
Author: Marcin Kosinski <m.p.kosinski@gmail.com>, Przemyslaw Biecek
<przemyslaw.biecek@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: The Cancer Genome Atlas (TCGA) Data Portal provides a
platform for researchers to search, download, and analyze data
sets generated by TCGA. It contains clinical information,
genomic characterization data, and high level sequence analysis
of the tumor genomes. The key is to understand genomics to
improve cancer care. RTCGA package offers download and
integration of the variety and volume of TCGA data using
patient barcode key, what enables easier data possession. This
may have an benefcial infuence on impact on development of
science and improvement of patients' treatment. Furthermore,
RTCGA package transforms TCGA data to tidy form which is
convenient to use.
BugReports: https://github.com/RTCGA/RTCGA/issues
URL: https://rtcga.github.io/RTCGA
License: GPL-2
LazyLoad: yes
LazyData: yes
Depends: R (>= 3.2.0)
Imports: XML, assertthat, stringi, rvest, data.table, xml2, devtools,
dplyr, purrr, knitr, survival, survminer, ggplot2, ggthemes,
viridis, scales
Suggests: testthat, pander, Biobase, GenomicRanges, IRanges, S4Vectors,
RTCGA.rnaseq, RTCGA.clinical, RTCGA.mutations, RTCGA.RPPA,
RTCGA.mRNA, RTCGA.miRNASeq, RTCGA.methylation, RTCGA.CNV,
RTCGA.PANCAN12, magrittr, tidyr
Repository: Bioconductor
biocViews: Software, DataImport, DataRepresentation, Preprocessing
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-05-16 05:39:45 UTC; biocbuild
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