methyAnalysis : DNA methylation data analysis and visualization

Package: methyAnalysis
Type: Package
Title: DNA methylation data analysis and visualization
Version: 1.14.0
Date: 2016-03-15
Depends: R (>= 2.10), grid, BiocGenerics, IRanges, GenomeInfoDb,
GenomicRanges, Biobase (>= 2.5.5), org.Hs.eg.db
Imports: lumi, methylumi, Gviz, genoset, SummarizedExperiment,
GenomicRanges, VariantAnnotation, IRanges, rtracklayer,
GenomicFeatures, annotate, Biobase (>= 2.5.5), AnnotationDbi,
genefilter, biomaRt, methods, parallel
Suggests: FDb.InfiniumMethylation.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene
Author: Pan Du, Richard Bourgon
Maintainer: Pan Du <dupan.mail@gmail.com>
Description: The methyAnalysis package aims for the DNA methylation data
analysis and visualization. A MethyGenoSet class is defined to keep the
chromosome location information together with the data. The package also includes
functions of estimating the methylation levels from Methy-Seq data.
License: Artistic-2.0
LazyLoad: yes
biocViews: Microarray, DNAMethylation, Visualization
Collate: 'MethyGenoSet-class.R' 'methyAnalysis.R'
'heatmapByChromosome.R' 'methyl-seq.R'
NeedsCompilation: no
Packaged: 2016-05-04 04:43:50 UTC; biocbuild