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Calculates the Bhattacharyya coefficient of two samples.
● Data Source:
BioConductor
● Keywords:
● Alias: bhattacharyyaCoefficient
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0 images
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Calculates the Bhattacharyya coefficient of all pairwise comparison from a list of data frames.
● Data Source:
BioConductor
● Keywords:
● Alias: bhattacharyyaMatrix
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0 images
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chordDiagramVDJ
(Package: LymphoSeq) :
Chord diagram of VJ or DJ gene associations
Creates a chord diagram showing VJ or DJ gene associations from one or more samples.
● Data Source:
BioConductor
● Keywords:
● Alias: chordDiagramVDJ
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2 images
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Creates a data frame giving the total number of sequences, number of unique productive sequences, number of genomes, entropy, clonality, Gini coefficient, and the frequency (%) of the top productive sequences in a list of sample data frames.
● Data Source:
BioConductor
● Keywords:
● Alias: clonality
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0 images
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Creates line plot tracking amino acid frequencies across multiple samples
● Data Source:
BioConductor
● Keywords:
● Alias: cloneTrack
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6 images
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commonSeqs
(Package: LymphoSeq) :
Common sequences in two or more samples
Creates a data frame of the common sequences in two or more samples, reporting their frequencies in each.
● Data Source:
BioConductor
● Keywords:
● Alias: commonSeqs
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0 images
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Creates a scatter plot of just the sequences in common between two samples.
● Data Source:
BioConductor
● Keywords:
● Alias: commonSeqsPlot
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2 images
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Creates a Venn diagram comparing the number of common sequences in two or three samples.
● Data Source:
BioConductor
● Keywords:
● Alias: commonSeqsVenn
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3 images
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Creates a data frame of VDJ gene counts and frequencies.
● Data Source:
BioConductor
● Keywords:
● Alias: geneFreq
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4 images
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Plots a Lorenz curve derived from the frequency of the amino acid sequences.
● Data Source:
BioConductor
● Keywords:
● Alias: lorenzCurve
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3 images
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providing 
.