MethPed
(Package: MethPed) :
MethPed: a DNA methylation classifier tool for the identification of pediatric brain tumor subtypes.
The current version of MethPed can classify the following tumor diagnoses/subgroups: Diffuse Intrinsic Pontine Glioma (DIPG), Ependymoma, Embryonal tumors with multilayered rosettes (ETMR), Glioblastoma (GBM), Medulloblastoma (MB) - Group 3 (MB_Gr3), Group 4 (MB_Gr3), Group WNT (MB_WNT), Group SHH (MB_SHH) and Pilocytic Astrocytoma (PiloAstro).
● Data Source:
BioConductor
● Keywords:
● Alias: MethPed
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2 images
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MethPed_900probes
(Package: MethPed) :
List of 900 probes in the predictor data
List of 900 probes in the predictor (Training data for Random Forest model)
● Data Source:
BioConductor
● Keywords: data
● Alias: MethPed_900probes
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0 images
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MethPed_sample
(Package: MethPed) :
Sample dataset to MethPed package.
Methylation beta-values generated with the Infinium HumanMethylation450 BeadChips (Illumina).
● Data Source:
BioConductor
● Keywords: data
● Alias: MethPed_sample
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0 images
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checkNA
(Package: MethPed) :
Check missing valus in dataset
Check missing valus in dataset
● Data Source:
BioConductor
● Keywords:
● Alias: checkNA
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0 images
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plot.methped
(Package: MethPed) :
Plot conditional probability of samples that belongs to different tumor subtypes.
Plot conditional probability of samples that belongs to different tumor subtypes.
● Data Source:
BioConductor
● Keywords:
● Alias: plot.methped
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1 images
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probeMis
(Package: MethPed) :
Missing probe names from training data compared with input samples.
Missing probe names from training data compared with input samples.
● Data Source:
BioConductor
● Keywords:
● Alias: probeMis
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0 images
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summary.methped
(Package: MethPed) :
Summary of conditional probability or binary classification of samples that belong to different tumor subtypes.
Summary of conditional probability or binary classification of samples that belong to different tumor subtypes.
● Data Source:
BioConductor
● Keywords:
● Alias: summary.methped
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0 images
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