Last data update: 2014.03.03
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proteoQC
Package: proteoQC
Type: Package
Title: An R package for proteomics data quality control
Version: 1.8.2
Author: Bo Wen <wenbo@genomics.cn>, Laurent Gatto <lg390@cam.ac.uk>
Maintainer: Bo Wen <wenbo@genomics.cn>
Description: This package creates a HTML format QC report for MS/MS-based
proteomics data. The report is intended to allow the user to quickly assess
the quality of proteomics data.
Depends: R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports: rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel,
Rcpp (>= 0.11.1)
LinkingTo: Rcpp
License: LGPL-2
Suggests: RforProteomics, knitr, BiocStyle, rpx, R.utils,
RUnit, BiocGenerics
VignetteBuilder: knitr
biocViews: Proteomics, MassSpectrometry, QualityControl, Visualization,
ReportWriting
NeedsCompilation: yes
Packaged: 2016-05-16 04:34:10 UTC; biocbuild
● BiocViews: MassSpectrometry, Proteomics, QualityControl, ReportWriting, Visualization
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1 images,
25 functions,
0 datasets
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Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'proteoQC' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -fpic -g -O2 -c utilities.cpp -o utilities.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o proteoQC.so utilities.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/proteoQC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'proteoQC'
finding HTML links ... done
addSummaryChart html
calcMSQCMetrics html
chargeStat html
cntStat html
combineRun html
createTargetDecoyDB html
getEnzyme html
getMods html
labelRatio html
loadmsQCres html
msQCpipe html
plotBioRepVenn html
plotFractionIDResult html
plotMS1Error html
plotMS2Error html
plotMS2Error_obsolete html
plotSampleIDResultErrorBar html
plotSampleVenn html
plotTechRepVenn html
print.msQCres html
proteinGroup html
reportHTML html
runTandem html
showEnzyme html
showMods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (proteoQC)
Making 'packages.html' ... done
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