R Graphical Manual

Last data update: 2014.03.03

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CranContrib
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Results 1 - 8 of 8 found.
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MiST : Mixed effects Score Test for continuous outcomes

Package: MiST
Type: Package
Title: Mixed effects Score Test for continuous outcomes
Version: 1.0
Date: 2013-03-18
Author: Jianping Sun, Yingye Zheng, and Li Hsu
Maintainer: Jianping Sun <jsun@fhcrc.org>
Depends: CompQuadForm
Description: Test for association between a set of SNPS/genes and
continuous or binary outcomes by including variant
characteristic information and using (weighted) score
statistics.
License: LGPL (>= 2.0)
LazyLoad: yes
Packaged: 2013-12-14 15:53:38 UTC; ripley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-12-14 17:01:19

● Data Source: CranContrib
● 0 images, 5 functions, 1 datasets
● Reverse Depends: 0

LGEWIS : Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies

Package: LGEWIS
Type: Package
Title: Tests for Genetic Association/Gene-Environment Interaction in
Longitudinal Gene-Environment-Wide Interaction Studies
Version: 0.2
Date: 2015-10-07
Author: Zihuai He, Seunggeun Lee, Bhramar Mukherjee, Min Zhang
Maintainer: Zihuai He <zihuai@umich.edu>
Description: Functions for testing the genetic association/gene-environment interaction in longitudinal gene-environment-wide interaction studies. Generalized score type tests are used for set based analyses. Then GEE based score tests are applied to all single variants within the defined set.
License: GPL-3
Depends: CompQuadForm, SKAT, geeM, pls, splines
NeedsCompilation: no
Packaged: 2015-10-12 13:14:06 UTC; statzihuai
Repository: CRAN
Date/Publication: 2015-10-14 09:48:39

● Data Source: CranContrib
● 0 images, 8 functions, 1 datasets
● Reverse Depends: 0

LGRF : Set-Based Tests for Genetic Association in Longitudinal Studies

Package: LGRF
Type: Package
Title: Set-Based Tests for Genetic Association in Longitudinal Studies
Version: 1.0
Date: 2015-08-20
Author: Zihuai He
Maintainer: Zihuai He <zihuai@umich.edu>
Description: Functions for the longitudinal genetic random field method (He et al., 2015, <doi:10.1111/biom.12310>) to test the association between a longitudinally measured quantitative outcome and a set of genetic variants in a gene/region.
License: GPL-3
Depends: CompQuadForm, SKAT, geepack
NeedsCompilation: no
Packaged: 2015-09-12 17:07:13 UTC; statzihuai
Repository: CRAN
Date/Publication: 2015-09-13 09:22:48

● Data Source: CranContrib
● 0 images, 6 functions, 1 datasets
● Reverse Depends: 0

gskat : GEE_KM

Package: gskat
Type: Package
Title: GEE_KM
Version: 1.0
Date: 2012-12-20
Author: Xuefeng Wang
Maintainer: Xuefeng Wang <pwxfor@gmail.com>
Description: Family based association test via GEE Kernel Machine score test
License: GPL (>= 2)
LazyData: yes
LazyLoad: yes
Depends: R (>= 2.10), CompQuadForm, e1071, gee, geepack, Matrix
Packaged: 2013-11-03 19:59:57 UTC; peter
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-11-04 08:07:19

● Data Source: CranContrib
● 0 images, 8 functions, 1 datasets
● Reverse Depends: 0

iGasso : Statistical Tests and Utilities for Genetic Association

Package: iGasso
Type: Package
Title: Statistical Tests and Utilities for Genetic Association
Version: 1.4
Date: 2016-06-03
Author: Dr. Kai Wang
Maintainer: Kai Wang <kai-wang@uiowa.edu>
Depends: lattice, CompQuadForm
Description: A collection of statistical tests for genetic association studies.
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-06-03 23:02:38 UTC; kaiwang
Repository: CRAN
Date/Publication: 2016-06-04 07:52:27

● Data Source: CranContrib
● 0 images, 6 functions, 0 datasets
● Reverse Depends: 0

skatMeta : Efficient meta analysis for the SKAT test

Package: skatMeta
Type: Package
Title: Efficient meta analysis for the SKAT test
Version: 1.4.3
Date: 2012-11-21
Author: Arend Voorman, Jennifer Brody, Thomas Lumley
Maintainer: Arend Voorman <voorma@uw.edu>
Depends: R (>= 2.10), Matrix, coxme, survival, CompQuadForm
Suggests: SKAT, kinship2
Description: Computes necessary information to meta analyze SKAT
statistics in each individual cohort, and then performs the
meta analysis.
License: GPL (>= 2)
Packaged: 2013-06-04 02:06:18 UTC; arie
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-06-04 08:07:42

● Data Source: CranContrib
● Cran Task View: MetaAnalysis
● 0 images, 6 functions, 2 datasets
● Reverse Depends: 0

rvTDT : population control weighted rare-variants TDT

Package: rvTDT
Type: Package
Title: population control weighted rare-variants TDT
Version: 1.0
Date: 2014-04-07
Author: Yu Jiang, Andrew S. Allen
Maintainer: Yu Jiang <yu.jiang@dm.duke.edu>
Description: Used to compute population controls weighted rare variants transmission distortion test
License: GPL-3
Depends: CompQuadForm (>= 1.4.1)
Packaged: 2014-04-10 20:16:07 UTC; yujiang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 07:52:45

● Data Source: CranContrib
● 0 images, 4 functions, 0 datasets
● Reverse Depends: 0

pedgene : Gene-Level Statistics for Pedigree Data

Package: pedgene
Type: Package
Title: Gene-Level Statistics for Pedigree Data
Version: 2.9
Date: 2015-9-30
Authors@R: c(person("Schaid", "Daniel", role="aut"),
person("Jason", "Sinnwell", email="sinnwell.jason@mayo.edu",role=c("aut","cre")))
Description: Gene-level association tests with disease status for pedigree data: kernel and burden association statistics.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 3.1.1), stats, Matrix, CompQuadForm, survey, kinship2
(>= 1.6.0)
NeedsCompilation: no
Packaged: 2015-10-09 16:32:47 UTC; sinnwell
Author: Schaid Daniel [aut],
Jason Sinnwell [aut, cre]
Maintainer: Jason Sinnwell <sinnwell.jason@mayo.edu>
Repository: CRAN
Date/Publication: 2015-10-10 00:38:23

● Data Source: CranContrib
● 0 images, 3 functions, 1 datasets
● Reverse Depends: 0