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Last data update: 2014.03.03
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Package: waveTiling
Version: 1.14.0
Date: 2012-05-14
License: GPL (>=2)
Title: Wavelet-Based Models for Tiling Array Transcriptome Analysis
Author: Kristof De Beuf <kristof.debeuf@UGent.be>, Peter Pipelers
<peter.pipelers@ugent.be> and Lieven Clement
<lieven.clement@gmail.com>
Maintainer: Kristof De Beuf <kristof.debeuf@UGent.be>
Depends: oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs
Imports: methods, affy, preprocessCore, GenomicRanges, waveslim,
IRanges
Suggests: BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData,
pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart22
Description: This package is designed to conduct transcriptome analysis
for tiling arrays based on fast wavelet-based functional
models.
Collate: allClasses.R allGenerics.R helperFunctions.R
initialize-methods.R methods-MapFilterProbe.R
methods-WaveTilingFeatureSet.R methods-WfmFit.R
methods-WfmInf.R show-methods.R
URL: https://r-forge.r-project.org/projects/wavetiling/
LazyLoad: yes
LazyData:
Packaged: 2016-05-04 04:40:22 UTC; biocbuild
biocViews: Microarray, DifferentialExpression, TimeCourse,
GeneExpression
NeedsCompilation: yes
● Data Source:
BioConductor
● BiocViews: DifferentialExpression, GeneExpression, Microarray, TimeCourse
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1 images,
27 functions,
0 datasets
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Reverse Depends: 0
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Package: Genominator
Version: 1.26.0
Title: Analyze, manage and store genomic data
Description: Tools for storing, accessing, analyzing and visualizing genomic data.
Author: James Bullard, Kasper Daniel Hansen
Maintainer: James Bullard <bullard@stat.berkeley.edu>
Depends: R (>= 2.10), methods, RSQLite, DBI (>= 0.2-5), BiocGenerics
(>= 0.1.0), IRanges (>= 2.5.27), GenomeGraphs
Imports: graphics, stats, utils
Suggests: biomaRt, ShortRead, yeastRNASeq
Collate: Genominator.R importAndManage.R annotation.R goodnessOfFit.R
plotRegion.R coverage.R diffExp.R emZero.R primingWeights.R
License: Artistic-2.0
LazyLoad: yes
biocViews: Infrastructure
NeedsCompilation: no
Packaged: 2016-05-05 02:19:14 UTC; biocbuild
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